Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2180g00006 ATGCCAGAGCGACGACGCTGTATACAAATTAGACATAGCAAGAAAGAAAGAAAGGAAGAGAAGAACAAAGAGGAGAAAATGGGAAGAGCTCCTTGCTGCCAGAAAGTGGGGTTGAAGAGAGGCCCTTGGACTCCGGAAGAAGATCAGATCCTGATCAATCATGTCAACAAATATGGCCACAGCAATTGGCGTGCTCTCCCCAAATTAGCTGGGCTTCTGAGGTGTGGAAAAAGTTGCAGACTCCGGTGGATAAATTATTTGAAGCCAGACATCAAACGAGGAAACTTCACCCCAGAAGAAGAGGATGCCATCATCAAGCTTCATGAAATGTTGGGAAACAAATGGTCAGCAATAGCAGCGAAGTTGCCAGGCCGCACAGACAACGAAATCAAGAATGTTTGGCACACACACTTGAAGAAGAGGCTTCCTCAGAACCAACAGAACCATCCCCAAACAAAACGAAAACCAAAGCAAAAGGAACAACATGCCGTGACGGAAAACAGACCACTCTCTCCTTCTCATTCAAGTGATGTGTCCACCCTCACCACAAACAACGATAACAGTATTACGACTAGTAGTCCTGCGACTAACGTCAATAACGACGACGACATGTCCGTAAATATTAATGTTGAGTCTCCGGCGCCGGAGGAGTCCCTGGCATTGGACGATGATTTCTGGTCGGAAGTCCTGTCGGCTGATAACTCTGAGGAGACTACTGATTATATTCCGGCGGAAGGCGGTGGGGTGGAGTACTCACAGTTTCAGTTGCTTTTGTCTCAGCTGGACGATGCACAAGTAGAAGGAGATCATGTCAGTTCATTATGCACGGGGGATGAGATGGATTTTTGGTTTGATGTTTACAATAGAGCCGAGGAATTCACGGAGCTGCCACAGTTATGA 900 0.4678 MPERRRCIQIRHSKKERKEEKNKEEKMGRAPCCQKVGLKRGPWTPEEDQILINHVNKYGHSNWRALPKLAGLLRCGKSCRLRWINYLKPDIKRGNFTPEEEDAIIKLHEMLGNKWSAIAAKLPGRTDNEIKNVWHTHLKKRLPQNQQNHPQTKRKPKQKEQHAVTENRPLSPSHSSDVSTLTTNNDNSITTSSPATNVNNDDDMSVNINVESPAPEESLALDDDFWSEVLSADNSEETTDYIPAEGGGVEYSQFQLLLSQLDDAQVEGDHVSSLCTGDEMDFWFDVYNRAEEFTELPQL 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2180g00006 299 Gene3D - 37 93 - -
Pral2180g00006 299 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 27 239 - -
Pral2180g00006 299 MobiDBLite consensus disorder prediction 140 204 - -
Pral2180g00006 299 FunFam Transcription factor MYB15 94 167 - -
Pral2180g00006 299 SUPERFAMILY Homeodomain-like 37 134 IPR009057 -
Pral2180g00006 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 142 IPR017930 -
Pral2180g00006 299 CDD SANT 95 138 IPR001005 -
Pral2180g00006 299 CDD SANT 42 87 IPR001005 -
Pral2180g00006 299 ProSiteProfiles Myb-like domain profile. 88 138 IPR001005 -
Pral2180g00006 299 MobiDBLite consensus disorder prediction 165 204 - -
Pral2180g00006 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 35 87 IPR017930 -
Pral2180g00006 299 FunFam MYB-related transcription factor 39 92 - -
Pral2180g00006 299 Gene3D - 94 168 - -
Pral2180g00006 299 ProSiteProfiles Myb-like domain profile. 35 87 IPR001005 -
Pral2180g00006 299 Pfam Myb-like DNA-binding domain 93 138 IPR001005 -
Pral2180g00006 299 Pfam Myb-like DNA-binding domain 40 87 IPR001005 -
Pral2180g00006 299 MobiDBLite consensus disorder prediction 1 30 - -
Pral2180g00006 299 SMART sant 92 140 IPR001005 -
Pral2180g00006 299 SMART sant 39 89 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2180g00006 Pral-Chr2180 16155 17929 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2180g00006 27 299 MYB Transcription Factor Family AT2G31180 52.536 5.21e-91 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral2180g00006 Myb_DNA-binding 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2180g00006 K09422 - gmx:100775603 335.88