Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2179g00004 ATGGCTCAACCAGCAGTGTCCTCTTGCATTGATTACAAATGGAAGTATGACGTGTTTCCTAGTTTTCATGGTGAAGACAGTCGGTTAAGTTTCGTTAGCTTTCTTCGCGGATCTCTACATGAAAGAGGAATCCGTGTCTTTATGGATGATGAGCACATCAGAACGGGAGAAGAAATCACACCAGCACTTATCAAAGCCATAAGAGAATCCAGGATAGCTATCATAGTTTTCTCCGAGAACTATGCCAACTCAACATTCTGCCTGCAGGAACTTGTAGAGATTCTCAAATGCTTTAAAGAAGAAGGTCGGTTAATATATCCAATATTTTACTATGTGGATCCATCAGAGTTGCGACGTCCGAGAGCAAGCTATGCAGAGGCTTTGGCTCGATTGGAGGAAAGATTTAAGGACAATAAACAACAAGTAGAAAATTGGAGGTTGGCTTTGTCCCAAGCAGCTAATTTGAAAGGGTGTCATCTCAAAGCCAAGATTGCAAATGAGCAAGAACATATTACAAAGATCACCAATGAAGTATCAGCGAGGATTAATCGTATTCATAATCATTTACACGTTACTCAATACCCTGTTGGACTTGTGTCTCGGGTGAAAGAAGTGGTCTCACATTTAGATCTTTGGTCTACTAAGAAAAATAAAATGGTTGGAATTGTGGGACCTGGTGGGATAGGTAAATCAACGATTGCAAGAGCCTTATATAATTTGATTGCTGATCATTTTGAAGGCTTATGTTTTCTTCCTAATGTGAGGGAAAAGTCTAGAATGCCAAATGGTTTGGCACATCTTCAAGAGACATTGCTTTGTAAATTAGTCAAGGAGAAAGATCTCAAATTGGGTGATTTGCATGAAGGAATACCAGTAATAAAACATAGGCTTGGCCACAAGAAAATTCTTTTGATCATTGATGATGTTGATGAATTGAAACAGCTAGAAGCTCTAGCTGGAAGTTGTGATTGGTTTGGTCTTGGAAGTAGAATTGTCATAACAACTAGAAATAAACAGTTGTTAGCAAGTTCTCATGTTAAGAGCATTTATAATGTTAGGGAATTACATGATGAGGAATCTCTTCAATTGCTTTGTTGGCATGCCTTTAAAAAGGAGAATGTGGAGTCTGATTTCATGGAGGCTTCTAAGCGTGCAATACGTTATTGTTGTGGATTTCCATTAGTCCTAAAAGTGATTGGTTCTCACTTATGCGGTAGAGGAGTCAATGAATGGCACTCTGCATTGGATCAATTTAAAAGAATTCCACAAGGAGAAGTCTTGGAAGTCCTTAGATTAAGCTATGATGCTTTAGGAGAATTTGAGAAAGAAATTTTCCTACACTTGGCTTGTTTTTCCAAAGGTGAGGAATTAGGAGAAGTTAAGGGCATGTTGTTATGTTTATATGGAATCCCACTAGATAATGTTATTAATGTTCTGGTCAATAAATCCCTCATAAGGATTGAAGGAGATCAGGTGTTAATGCATGACGTGATTGAAGATATGGGTAAAGAAATTGTTCGACAAGAATCACCAAATGAACCTGGGAACCAATAA 1554 0.3816 MAQPAVSSCIDYKWKYDVFPSFHGEDSRLSFVSFLRGSLHERGIRVFMDDEHIRTGEEITPALIKAIRESRIAIIVFSENYANSTFCLQELVEILKCFKEEGRLIYPIFYYVDPSELRRPRASYAEALARLEERFKDNKQQVENWRLALSQAANLKGCHLKAKIANEQEHITKITNEVSARINRIHNHLHVTQYPVGLVSRVKEVVSHLDLWSTKKNKMVGIVGPGGIGKSTIARALYNLIADHFEGLCFLPNVREKSRMPNGLAHLQETLLCKLVKEKDLKLGDLHEGIPVIKHRLGHKKILLIIDDVDELKQLEALAGSCDWFGLGSRIVITTRNKQLLASSHVKSIYNVRELHDEESLQLLCWHAFKKENVESDFMEASKRAIRYCCGFPLVLKVIGSHLCGRGVNEWHSALDQFKRIPQGEVLEVLRLSYDALGEFEKEIFLHLACFSKGEELGEVKGMLLCLYGIPLDNVINVLVNKSLIRIEGDQVLMHDVIEDMGKEIVRQESPNEPGNQ 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2179g00004 517 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 516 IPR044974 GO:0006952
Pral2179g00004 517 SUPERFAMILY "Winged helix" DNA-binding domain 425 510 IPR036390 -
Pral2179g00004 517 Pfam NB-ARC domain 202 424 IPR002182 GO:0043531
Pral2179g00004 517 ProSiteProfiles TIR domain profile. 14 182 IPR000157 GO:0007165
Pral2179g00004 517 FunFam Disease resistance protein (TIR-NBS-LRR class) 12 184 - -
Pral2179g00004 517 Gene3D - 9 181 IPR035897 -
Pral2179g00004 517 Gene3D - 354 438 IPR042197 -
Pral2179g00004 517 PRINTS Disease resistance protein signature 389 403 - -
Pral2179g00004 517 PRINTS Disease resistance protein signature 219 234 - -
Pral2179g00004 517 PRINTS Disease resistance protein signature 296 310 - -
Pral2179g00004 517 Gene3D - 182 351 IPR027417 -
Pral2179g00004 517 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 157 IPR035897 -
Pral2179g00004 517 SMART till_3 15 155 IPR000157 GO:0007165
Pral2179g00004 517 Pfam TIR domain 15 182 IPR000157 GO:0007165
Pral2179g00004 517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 448 IPR027417 -
Pral2179g00004 517 Coils Coil 121 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2179g00004 Pral-Chr2179 39398 42917 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2179g00004 218 510 WRKY Transcription Factor Family AT5G45050 32.993 1.22e-41 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2179g00004 - - pcin:129318502 752.666