Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2177g00006 ATGGATTGGAATTTGAAGGGTGGCTCGTGGGATATGACTGAATTAGATGGAGGAGGTTTACCCAACATAGAAACAACAACGGCTGATAACTATGACGGGTCAGGCCGATTTGGATTAGTGAACGGAAGTGGAGGCGAATTTTGCGTTGATTTGAAGCTGGGTCAGGTCGGCAATTCTGGAACTGAGTCTTCAGGGCCCAAGTGGAAAGTCGCCGCCGCTGCTGGCGGCGGCGGCGAAGGCGGAGTCCCCAGGACGGCAGCGTCGACTCCTTCAGGATCATCGAAGAGAGCTCGGGCAATTAACAACGGGATCCAAACGGCGTCGTGCCTTGTGGATGGGTGCAGTTCAGATCTCAGTAATTGTAGGGAGTACCATAGGCGTCACAAGGTGTGCGAGCTCCATTCCAAGGCTCCTGTGGTCACCATTGGTGGCCACAAGCAAAGGTTCTGCCAACAGTGTAGCAGGTTTCATTCACTGGAAGAATTTGATGAAGGGAAGAGAAGCTGCAGGAAGCGATTAGATGGGCACAACCGACGGAGAAGAAAGCCCCAGCCAGTGCCTCTCACCCGGTCTGCTACTTTATTCTCGAATTACCACCAAGGGAGGCAGTTAATACCCTTATCATCGGGCTCAAATCTCTATCCTTCAAGTGCTATGGTGAACACTGGTTGGGACTGGGAATGGGATGCTAGGACGACGATGGTTCATCATAATAATAAACACCAGATATTTCTTGGGTCTTCTGAAAGCGCCAGAATTAAGCAGGAAGTGACGACATATCATGAGAAGCCATGTGCCGAAACTGCTTCTGGGTGCCACACAGTTCTGAGGACGACGGCGGTCAGGCCTGCAGGGTCTTTCTCATCGGCGGAGGAGTCTCCTCCTCCGCCTTGTGCTCTCTCTCTTCTGTCATCACCGCCGGCACCCACGTACCTGTCACAGTCTCTTGGCCCCACCACCCTCCATGAGCACGGCTTACAACAGGCCGTGGACACCACGCTTCTGGTGAGCAATGGGACTCAGCCTTCAATGTATAACTTGTTAGGGTCTGATGCATCCCAGGGGATCCATACTTCTCAATCACTTCCATTTCAGTGGGAATAA 1104 0.5236 MDWNLKGGSWDMTELDGGGLPNIETTTADNYDGSGRFGLVNGSGGEFCVDLKLGQVGNSGTESSGPKWKVAAAAGGGGEGGVPRTAASTPSGSSKRARAINNGIQTASCLVDGCSSDLSNCREYHRRHKVCELHSKAPVVTIGGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPVPLTRSATLFSNYHQGRQLIPLSSGSNLYPSSAMVNTGWDWEWDARTTMVHHNNKHQIFLGSSESARIKQEVTTYHEKPCAETASGCHTVLRTTAVRPAGSFSSAEESPPPPCALSLLSSPPAPTYLSQSLGPTTLHEHGLQQAVDTTLLVSNGTQPSMYNLLGSDASQGIHTSQSLPFQWE 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2177g00006 367 MobiDBLite consensus disorder prediction 1 21 - -
Pral2177g00006 367 FunFam Squamosa promoter-binding-like protein 14 100 170 - -
Pral2177g00006 367 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 63 325 IPR044817 GO:0003677
Pral2177g00006 367 Pfam SBP domain 109 182 IPR004333 GO:0003677
Pral2177g00006 367 ProSiteProfiles Zinc finger SBP-type profile. 106 183 IPR004333 GO:0003677
Pral2177g00006 367 MobiDBLite consensus disorder prediction 73 96 - -
Pral2177g00006 367 SUPERFAMILY SBT domain 108 185 IPR036893 GO:0003677|GO:0005634
Pral2177g00006 367 Gene3D - 100 170 IPR036893 GO:0003677|GO:0005634
Pral2177g00006 367 MobiDBLite consensus disorder prediction 285 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2177g00006 Pral-Chr2177 31116 32862 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2177g00006 1 224 SBP-box Gene Family AT5G50670 50.638 8.29e-64 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pral2177g00006 SBP 3.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2177g00006 - - pcin:129320715 476.478