Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2175g00003 ATGCCTGTCAAATCGGCGCAATCATCGTTTAGGGATCGGACACAGGAGTTTCAGAGTATAGCAGAGAGGCTAAAGAAATCAGTGTCGTTCGGATCAGGATCAAACGGGCCAAGCAGTAGTTCAAGATCGGAGGAACAGCGGTCAGCGATAGCAATTCAGTCAGAATTCAATAGGAGGGCTTCCAAGATTGGTTATGGAATACATCAGACATCACAGAAACTTGCTAAGCTGGCCAAGTTGGCAAAAAGGACGTCGGTTTTCGATGACCCCACCATGGAAATCCAGGAGCTCACAGCAGTTATTAAGCAAGATATCACTGCATTGAACTCTGCCGTTGTGGAACTGCAGCTAATCAGCAACGCTAGAAATGACAGCGGAAATATTTCTAGTGACACAACTAGTCATTCAACCACAGTGGTGGATGACCTTAAAACCCGATTGATGAGTACCACAAAAGAGTTTAAAGAAGTCCTTACCATGCGAACAGAGAACTTGAAGGTACATGAGAATAGAAGACAGTTGTTTTCTTCCACTGCTTCTAAGGAAGCTGCAAATCCTTTTGTTCGTCAACGTCCCTTGGCTGCAAAGTCAGCTGCCAATGCCCCTGCACCCCCATGGGCCAGTGGGAAGCAAGTGGATGGGGAGAGTCAACCGTTGCTGCTGCAGCAGCAGCAGCAGCAACAAATGGTTCCATTGCAGGACACATATATGCAGAGCAGAGCCGAAGCTCTTCAGAATGTTGAGTCCACTATTCATGAGTTGAGCAGCATTTTTAATCAATTGGCTACACTTGTCTCCCAGCAAGGGGAGATTGCCATCAGGATTGATGAGAACATGGACGATACGTTGGCAAATGTAGAAGGGGCACAGGGGGCTTTGCTAAAATATCTGAACAGTATATCTTCTAATAGGTGGCTGATGATCAAGATATTCTTTGTATTAATATTTTTTCTCATGGTTTTCCTATTTTTTGTGGCATAG 981 0.4516 MPVKSAQSSFRDRTQEFQSIAERLKKSVSFGSGSNGPSSSSRSEEQRSAIAIQSEFNRRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSAVVELQLISNARNDSGNISSDTTSHSTTVVDDLKTRLMSTTKEFKEVLTMRTENLKVHENRRQLFSSTASKEAANPFVRQRPLAAKSAANAPAPPWASGKQVDGESQPLLLQQQQQQQMVPLQDTYMQSRAEALQNVESTIHELSSIFNQLATLVSQQGEIAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2175g00003 326 FunFam Syntaxin-32 like 50 289 - -
Pral2175g00003 326 Pfam SNARE domain 270 322 IPR000727 -
Pral2175g00003 326 PANTHER SYNTAXIN 50 318 IPR045242 -
Pral2175g00003 326 MobiDBLite consensus disorder prediction 194 215 - -
Pral2175g00003 326 SUPERFAMILY t-snare proteins 54 289 IPR010989 GO:0016020|GO:0016192
Pral2175g00003 326 CDD SNARE_syntaxin5 237 315 - -
Pral2175g00003 326 Gene3D - 50 289 - -
Pral2175g00003 326 SMART tSNARE_6 229 296 IPR000727 -
Pral2175g00003 326 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 7 26 IPR021538 -
Pral2175g00003 326 ProSitePatterns Syntaxin / epimorphin family signature. 240 279 IPR006012 GO:0005484|GO:0006886|GO:0016020
Pral2175g00003 326 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 234 296 IPR000727 -
Pral2175g00003 326 MobiDBLite consensus disorder prediction 28 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2175g00003 Pral-Chr2175 13706 17735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2175g00003 1 326 SNARE and Associated Proteins AT3G24350 64.266 1.38e-148 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2175g00003 K08490 - gmx:100811494 456.447