Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2170g00003 ATGGGTGAGCGGAAGCAAAGTGTGCCAGTTCTGCCATGGATGCGGGACCCTGTTGATGTGACTCTATCTGAAGAATGCCCTCTTGAATGTGTTCCTTGTCTTCACCCCAAGCTGAAGTTGGCATTGCAGAATATGGGCATCTCTAGGCTCTTTCCTGTGCAAATTGCAGTTTGGGAGGAGACAGTTGGGCCTGGTAATTTTGAGCGAGACCTTTGTATAAATTCTCCCACTGGAAGTGGAAAAACTTTAGCTTATGCTCTGCCAATTGTGCAAATGCTTTCAAACCGTGTTGTAAAATGCTTGCGAGCTTTAGTGGTGGTGCCCACTCGTGATCTTGCTTTACAGGTCAAAGAAGTTTTTGATGCCATTGCGTCTCCGTTAGGTTTACATGTTGGCTTGGCTGTTGGTCAATCTTCAATAGCTGATGAGATTTCTAAGCTTGTGGACATACCAGGATATGAGGTAGGCATGTGTTACGATCCAGAAGATATATCTCTTAGTTATCAACTGGGCTTCCAAAGTAAGGTGGATATATTGGTAGCTACCCCTGGAAGGCTCATGGATCACATCACCACCACTAAAGGGTTTACACTTGAGCATCTTTATTATCTTGTGGTTGATGAAACAGATCGGCTTCTCCGGGAGGCCTACCAATCGTGGTTACCTACTGTATTGGAACTAACTCGATCTAAGGACAAGAATAGTTATCCACTTGCTGGTTCAGTTCTTCGTAATTCATTTAGTGCATTAAGCACTAGAAGGAGATGTGGGGTTGAGAGGGGATTTAAAGATAAACCTTACCCCAGGTTGGCAAAGATGGTTCTATCTGCAACAATAACCCAGGACCCAGGAAAGCTTGTTCAACTTGATCTACATCACCCAGTATTCTTGAAAGCTGGGCAAATGCGTTATAGGCTTCCAGAAAATTTGGAATCACTCAAAGTGATCTGCGAAACAAAGGTCAAACCCTTGTATTTGGCTGCCCTTTTAAAATCACTGGGAGGAGAAAAATGCATAGTTTTCACAAAATCTGTGGATTCAACGCATCATCTATGCAAATTACTGAACTATTTCAGTGATCTTCAAATTAAGATCAAGGAGTATTCTAGTCTTCGACGTCAACATGTGAGAAGTAAGACATTGAAGGAATTTCGGAAAGGGGAGTTTCAAGTGCTTGTGTCTTCTGATGCAATGACTCGTGGAATGGATGTTGAAGGGGTGAGAAATGTTGTTAATTATGACATGCCAAAATACATAAAGACTTATGTTCATCGAGCTGGTAGGACAGCAAGAGCTGGGCATACTGGGCGTTGCTTCACACTGCTGTCCAAAGATGAGGCTAGACGATTTAAGAAGTTGTTGCAGAAGGCTGATAATAGTTCTTGCTGTGAACACTTTCTGCCCTCCAGTTTGATTGAAGAACTACATGCTACTTACCAATCAGCGCTGAAAAAATTTAAAGAGACAGTTTCGGAAGCCCGAAAGAAACCCAAGATCAGTTCAGAGACTTCTCAAGCAAACAAAACAAGTGAAAAAGATCATAGAGGGGAATAG 1554 0.426 MGERKQSVPVLPWMRDPVDVTLSEECPLECVPCLHPKLKLALQNMGISRLFPVQIAVWEETVGPGNFERDLCINSPTGSGKTLAYALPIVQMLSNRVVKCLRALVVVPTRDLALQVKEVFDAIASPLGLHVGLAVGQSSIADEISKLVDIPGYEVGMCYDPEDISLSYQLGFQSKVDILVATPGRLMDHITTTKGFTLEHLYYLVVDETDRLLREAYQSWLPTVLELTRSKDKNSYPLAGSVLRNSFSALSTRRRCGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLDLHHPVFLKAGQMRYRLPENLESLKVICETKVKPLYLAALLKSLGGEKCIVFTKSVDSTHHLCKLLNYFSDLQIKIKEYSSLRRQHVRSKTLKEFRKGEFQVLVSSDAMTRGMDVEGVRNVVNYDMPKYIKTYVHRAGRTARAGHTGRCFTLLSKDEARRFKKLLQKADNSSCCEHFLPSSLIEELHATYQSALKKFKETVSEARKKPKISSETSQANKTSEKDHRGE 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2170g00003 517 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 62 297 IPR014001 -
Pral2170g00003 517 CDD SF2_C_DEAD 315 442 - -
Pral2170g00003 517 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 325 475 IPR001650 -
Pral2170g00003 517 Gene3D - 23 300 IPR027417 -
Pral2170g00003 517 Pfam DEAD/DEAH box helicase 52 285 IPR011545 GO:0003676|GO:0005524
Pral2170g00003 517 PANTHER RNA HELICASE 34 495 - -
Pral2170g00003 517 SMART ultradead3 46 316 IPR014001 -
Pral2170g00003 517 CDD DEADc_DDX51 38 294 - -
Pral2170g00003 517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 455 IPR027417 -
Pral2170g00003 517 SMART helicmild6 349 433 IPR001650 -
Pral2170g00003 517 MobiDBLite consensus disorder prediction 490 517 - -
Pral2170g00003 517 Pfam Helicase conserved C-terminal domain 322 433 IPR001650 -
Pral2170g00003 517 Gene3D - 310 515 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2170g00003 Pral-Chr2170 2654 10732 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2170g00003 70 448 Eukaryotic Initiation Factors Gene Family AT3G13920 23.514 7.81e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2170g00003 K14807 - qsa:O6P43_013012 780.785