Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2170g00002 ATGGGTGAGCGGAAGCAAAGTGTGCCAGTTCTGCCATGGATGCGGGACCCTGTTGATGTGACTCTATCTGAAGAATGCCCTCTTGAATGTGTTCCTTGTCTTCACCCCAAGCTGAAGTTGGCATTGCAGAATATGGGCATCTCTAGGCTCTTTCCTGTGCAAATTGCAGTTTGGGAGGAGACAGTTGGGCCTGGTAATTTTGAGCGAGACCTTTGTATAAATTCTCCCACTGGAAGTGGAAAAACTTTAGCTTATGCTCTGCCAATTGTGCAAATGCTTTCAAACCGTGTTGTAAAATGCTTGCGAGCTTTAGTGGTGGTGCCCACTCGTGATCTTGCTTTACAGGTCAAAGAAGTTTTTGATGCCATTGCGTCTCCGTTAGGTTTACATGTTGGCTTGGCTGTTGGTCAATCTTCAATAGCTGATGAGATTTCTAAGCTTGTGGACATACCAGGATATGAGGTAGGCATGTGTTACGATCCAGAAGATATATCTCTTAGTTATCAACTGGGCTTCCAAAGTAAGGTGGATATATTGGTAGCTACCCCTGGAAGGCTCATGGATCACATCACCACCACTAAAGGGTTTACACTTGAGCATCTTTATTATCTTGTGGTTGATGAAACAGATCGGCTTCTCCGGGAGGCCTACCAATCGTGGTTACCTACTGTATTGGAACTAACTCGATCTAAGGACAAGAATAGTTATCCACTTGCTGGTTCAGTTCTTCGTAATTCATTTAGTGCATTAAGCACTAGAAGGAGATGTGGGGTTGAGAGGGGATTTAAAGATAAACCTTACCCCAGGTTGGCAAAGATGGTTCTATCTGCAACAATAACCCAGGACCCAGGAAAGCTTGTTCAACTTGATCTACATCACCCAGTATTCTTGAAAGCTGGGCAAATGCGTTATAGGCTTCCAGAAAATTTGGAATCACTCAAAGTGATCTGCGAAACAAAGGTCAAACCCTTGTATTTGGCTGCCCTTTTAAAATCACTGGGAGGAGAAAAATGCATAGTTTTCACAAAATCTGTGGATTCAACGCATCATCTATGCAAATTACTGAACTATTTCAGTGATCTTCAAATTAAGATCAAGGAGTATTCTAGTCTTCGACGTCAACATGTGAGAAGAAATGCCCGTTGCACTAGAAACTTCACAAGTCACTTAAATTGTGATTATTCAGCCACATGGTGTCTTGGACATCCTTTGGAATGCCTTTATGAAACGGCATCTTTTGAAACCTCTTGTTCAACGACACTCTCCAAGCTAAATCCAGTTCATTGTTACATAAGCTTGTTGGGACAAAGGTGCAATCTTTTGTTTGTCTTGTGCTTTTAA 1341 0.4236 MGERKQSVPVLPWMRDPVDVTLSEECPLECVPCLHPKLKLALQNMGISRLFPVQIAVWEETVGPGNFERDLCINSPTGSGKTLAYALPIVQMLSNRVVKCLRALVVVPTRDLALQVKEVFDAIASPLGLHVGLAVGQSSIADEISKLVDIPGYEVGMCYDPEDISLSYQLGFQSKVDILVATPGRLMDHITTTKGFTLEHLYYLVVDETDRLLREAYQSWLPTVLELTRSKDKNSYPLAGSVLRNSFSALSTRRRCGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLDLHHPVFLKAGQMRYRLPENLESLKVICETKVKPLYLAALLKSLGGEKCIVFTKSVDSTHHLCKLLNYFSDLQIKIKEYSSLRRQHVRRNARCTRNFTSHLNCDYSATWCLGHPLECLYETASFETSCSTTLSKLNPVHCYISLLGQRCNLLFVLCF 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2170g00002 446 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 62 297 IPR014001 -
Pral2170g00002 446 Gene3D - 304 390 IPR027417 -
Pral2170g00002 446 PANTHER RNA HELICASE 34 379 - -
Pral2170g00002 446 Gene3D - 23 300 IPR027417 -
Pral2170g00002 446 SMART ultradead3 46 316 IPR014001 -
Pral2170g00002 446 CDD DEADc_DDX51 38 294 - -
Pral2170g00002 446 Pfam DEAD/DEAH box helicase 52 285 IPR011545 GO:0003676|GO:0005524
Pral2170g00002 446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 298 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2170g00002 Pral-Chr2170 2653 9079 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2170g00002 70 272 Eukaryotic Initiation Factors Gene Family AT1G72730 26.108 5.18e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2170g00002 K14807 - qsa:O6P43_013012 577.785