Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2162g00003 ATGACATTCTTCTTCTGTACTTTGCTGTTCTCTAATTCATCCCTCGCTAGCAGTGAGGAAGCAAACGCTCTTTTAAAATGGAAAGCCACCCTTGGGAATCACAGTCTAGCTACCTTGTCTTCTTGGAAGAATGGAACAGATCCTTGCAGGAACTGGAAAGGAGTTACATGTGATGAATCAATGTCTGTCTCCATTATAAATCTTACCAGGTTGGGGATAAAAGGTACACTTCACAGTCTCAACTTCTCATCTTTTATTAAACTCCAAGCTTTAGATATCAGTCAGAATGAGTTTTCTGGGATTATTCCTCGCCAGATTGGTAACTTGTCTGCTTGTAGAATTCTTACGCTCAATATGAGTCATAATTTCTTGAGTGGTTCTATCCCTCGAGAAATAGGAGCCTTGACTAGTCTGAACATGCTTTCTCTTAGTGTGAATAATCTCACAGGAAAAATTCCCAGAGAGATCGGAATGCTGACTGATCTCACAGTGCTTGCCTTGCAAAGAAACACTTTCTTGAACGACAAAATCCCTTCTGCAATAGGAAATTTGACCAAACTGCAATATCTTTCTCTCTTTCGAAATAATCTGTGGGGTCTCATTCCTTCTGAGTTTGGGAATCTCCATTCTCTCATCAGTTTGCAACTGTCAAATAACAATTTGCACGGACCAATTCCATCTTCTTTTGGGAACTTGATCAAATTAGAAAATCTCAAGCTTGGAAATATTTCTCTTTCCGGAACTATTCCAGCTTCCATAGGAAATCTAACTCATCTCAAGATCCTTGATCTGAACAAGAACAAACTGGGTGGGCTCATTCCAATAGAGATGAATAATCTTACAAACTGGAAAAACTTAGAGCTTAGCGAGAATGATTTCACTGGCCATTTGCCACAACAGGTTTGCCTTGGTGGATTACTTGAACATTTCACTGCATGTGCGAATAAATTCACTGGCCCAGTTCCAAAAACCTTGAAAAATTGCTCTAGCCTTATCAGACTTAGACTTGATAACAACCGATTGGTTGGAAATATCACAAGTGACTTTGGTGTGTACCCAAATTTGAAATACATTGATTTGAGTGGCAATAAATTTTATGGCCGCATTTCATCTACGTGGGGAAAATGCTATAATCTCACATCACTTAGGATTTCCAACAACAATATCTCTGGAAGTATACCTCCAGAAGTTGGAGAGGCAACCAAACTTGGGGAATTTAATGTCTCATCAAATCAATTGACAGGAGAAATTCCAAAGGAAGTGGGAAAGATGACCTTATTGAGTAGACTTTCTTTAAGCAACAATCGATTTTCAGGCAAGATTCCAATAGAAATAGGGTCACTAAATCAACTTGAAGAATTGATGTTGTCAGATAATAATTTCACTGGCTCAATCCCCGAAGAGCTTGGAGGATTTTATAGGTTATGGCTCTTAGACTTGAGCAAAAATAAATTTACAGGAAGCATTCCCTTTGAGTTTGGTCATTTGCAGGCACTTCAAGAACTTGATCTTAGTGAGAACATGTTGTCGGGAACAATACCGGCAGCACTTGGAACACTGAAGATGCTACAAAATTTGAACATTTCACATAATAATCTCTCAGGTACCATTCCACCCCATTTTGATGACATGTCAAGTTTAACTTCTGTAGACATATCATACAACCATTTGGAAGGACCTCTTCCAAATACTCTTGCCTTTCGAAATATTACATTTGATGCAGTGAGGAACAACACAGGTTTATGTGTGGCGGGTGGAATTTTCTGTATTGTAATTCGAAAATCAAAGAATGCCAAGCGTGAAGATGACAAAGGATTAACTCAGAGTCTTTTCTCCATATGGTGTTTTGATGGGGAAATTTTGCATGAAAAAGTTATTGAAGTCACAGAAGATTCTAATGACAAATATCTCATTGCGTTGGGAGCACAAGGAAATGTTTACAAGGCTGAGTTATTTGAAGGTCAATTTTTTGCTGTGAAGAAACTTCATCCAAATTGTAATACAAATCTCTCCAATCTTAAAGCATTCTCAAGGGAAATTGAAACTTTGACTGAAATCAAACATCGTAATATAGTAAAGTTACTTGGGTTCTTTTCAAATTCACGGCTATCGTTCTTGGTTTATGAGTTCTTAGAAGGTGGTAGCTTGGATAAGATTTTGAAAAATCATAAGCAAGCAATTATACTTGATTGGGATAAGAGGGTGAATGTGGTTAGAGGTGTGGTTGATGCATTATTCCATATGCATCATGGTCTCTCATGCCCTATAGTCCATCGTGACATATCAAGCAAGAACATAATGTTAGATTCGGAATTTCAAGAAGCTCATGTCATTGACTTTGGAATAGCAAGGTTCCTAGATCTTGACTCAAACAACATGACCTCATCATTCGCTGGTACCCTTGGTTATACTGCTCCAGAGATTGCGTTTACAATGCACGTGAATGAAAAATGTGATATTTATAGCTTTGGTGTCGTCACATTAGAAATCCTAATGGGAAGACATCCTGGGGAGCTAATTCATTCTTTGACAGAGATTCCAACATCCTATAATAACATGCCATTTAAGGATGTGTTGGACCATCGGCTGCCTCCGCCCTCAAACCTAATTGTTGAGCAAGTGATGTTGATTGCAAAGATAGCACTTTCTTGCTTGAATGAAGATCCACGTTTTCGTCCAACCATGGAACAAGTTTGTTTGGAACTTGTGAGGCCTAAACCATATTCGATGAGCCAGGTCGACAAAATCACAATTGGACAACTACTCATGAAAGTTTAA 2778 0.3844 MTFFFCTLLFSNSSLASSEEANALLKWKATLGNHSLATLSSWKNGTDPCRNWKGVTCDESMSVSIINLTRLGIKGTLHSLNFSSFIKLQALDISQNEFSGIIPRQIGNLSACRILTLNMSHNFLSGSIPREIGALTSLNMLSLSVNNLTGKIPREIGMLTDLTVLALQRNTFLNDKIPSAIGNLTKLQYLSLFRNNLWGLIPSEFGNLHSLISLQLSNNNLHGPIPSSFGNLIKLENLKLGNISLSGTIPASIGNLTHLKILDLNKNKLGGLIPIEMNNLTNWKNLELSENDFTGHLPQQVCLGGLLEHFTACANKFTGPVPKTLKNCSSLIRLRLDNNRLVGNITSDFGVYPNLKYIDLSGNKFYGRISSTWGKCYNLTSLRISNNNISGSIPPEVGEATKLGEFNVSSNQLTGEIPKEVGKMTLLSRLSLSNNRFSGKIPIEIGSLNQLEELMLSDNNFTGSIPEELGGFYRLWLLDLSKNKFTGSIPFEFGHLQALQELDLSENMLSGTIPAALGTLKMLQNLNISHNNLSGTIPPHFDDMSSLTSVDISYNHLEGPLPNTLAFRNITFDAVRNNTGLCVAGGIFCIVIRKSKNAKREDDKGLTQSLFSIWCFDGEILHEKVIEVTEDSNDKYLIALGAQGNVYKAELFEGQFFAVKKLHPNCNTNLSNLKAFSREIETLTEIKHRNIVKLLGFFSNSRLSFLVYEFLEGGSLDKILKNHKQAIILDWDKRVNVVRGVVDALFHMHHGLSCPIVHRDISSKNIMLDSEFQEAHVIDFGIARFLDLDSNNMTSSFAGTLGYTAPEIAFTMHVNEKCDIYSFGVVTLEILMGRHPGELIHSLTEIPTSYNNMPFKDVLDHRLPPPSNLIVEQVMLIAKIALSCLNEDPRFRPTMEQVCLELVRPKPYSMSQVDKITIGQLLMKV 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2162g00003 925 PANTHER LEUCINE RICH REPEAT KINASE 2 230 907 - -
Pral2162g00003 925 ProSiteProfiles Protein kinase domain profile. 632 909 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral2162g00003 925 Gene3D Ribonuclease Inhibitor 303 586 IPR032675 -
Pral2162g00003 925 Pfam Protein kinase domain 640 899 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral2162g00003 925 ProSitePatterns Tyrosine protein kinases specific active-site signature. 756 768 IPR008266 GO:0004672|GO:0006468
Pral2162g00003 925 Pfam Leucine rich repeat N-terminal domain 18 58 IPR013210 -
Pral2162g00003 925 FunFam Nuclear pore complex protein NUP107 17 173 - -
Pral2162g00003 925 SUPERFAMILY L domain-like 81 418 - -
Pral2162g00003 925 Pfam Leucine rich repeat 493 533 IPR001611 GO:0005515
Pral2162g00003 925 Pfam Leucine Rich Repeat 87 109 IPR001611 GO:0005515
Pral2162g00003 925 FunFam Leucine-rich repeat receptor protein kinase MSP1 594 710 - -
Pral2162g00003 925 SUPERFAMILY L domain-like 309 583 - -
Pral2162g00003 925 Gene3D Phosphorylase Kinase; domain 1 594 710 - -
Pral2162g00003 925 Gene3D Transferase(Phosphotransferase) domain 1 711 916 - -
Pral2162g00003 925 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 174 242 - -
Pral2162g00003 925 Gene3D Ribonuclease Inhibitor 17 174 IPR032675 -
Pral2162g00003 925 SUPERFAMILY Protein kinase-like (PK-like) 623 901 IPR011009 -
Pral2162g00003 925 SMART LRR_typ_2 184 207 IPR003591 -
Pral2162g00003 925 SMART LRR_typ_2 496 520 IPR003591 -
Pral2162g00003 925 SMART LRR_typ_2 135 159 IPR003591 -
Pral2162g00003 925 SMART LRR_typ_2 208 231 IPR003591 -
Pral2162g00003 925 SMART LRR_typ_2 376 400 IPR003591 -
Pral2162g00003 925 SMART LRR_typ_2 448 472 IPR003591 -
Pral2162g00003 925 SMART LRR_typ_2 544 567 IPR003591 -
Pral2162g00003 925 SMART LRR_typ_2 256 280 IPR003591 -
Pral2162g00003 925 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 280 592 - -
Pral2162g00003 925 FunFam Leucine-rich repeat receptor-like protein kinase 711 912 - -
Pral2162g00003 925 Gene3D Ribonuclease Inhibitor 235 302 IPR032675 -
Pral2162g00003 925 Gene3D Ribonuclease Inhibitor 175 234 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2162g00003 Pral-Chr2162 32434 35938 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2162g00003 16 810 Receptor kinase-like Gene Family AT4G08850 40.874 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pral2162g00003 Pkinase 2.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2162g00003 - - pcin:129318235 949.503