Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2161g00002 ATGGCCATTGTTTCTTTCTCTTTTCGACCTTATTTGCATCCCCCCTCCGCTCCTTCGTCGTCGTCGTCTTCCTCCTCCTCCTCCTCCTCCTTTTTATGTGGTGGTGTCCACCTTCGGACCCATAAGAACTTCATCTCTATCCATTCACCTTCCCATTTTTCTTCCTCGACATTAAATAGTAGGTCCTCCTCGAGGAGCTTTCGAACGGCGATTGCTGCTTCTGGCGACTATTATGCTACTCTTGGAGTCTCCAAATCCGCGACCAACAAGGAGATTAAGGTGGCTTATCGAAAGTTAGCTCGTCAGTACCATCCTGACGTGAACAAGGAACCTGGAGCTATTGACAAGTTCAAGGAAATCAGTGCTGCATATGAGGTGCTATCAGATGATAAGAAGAGGGCATTGTATGATCAATATGGAGAGGCTGGAGTTAAGAGTACGGTAGGAGGAGCAAATGCTTATACGACTAATCCATTTGATTTGTTTGAGACATTTTTCGGGCCAAGTATGGGTGGCTTTGCTGGCATGGATCCAACTGGCTTTGGAACACGCCGCCGCAGTACTGTTACTAAGGGTCAAGACATTCGTTACGATATTTTGTTGGAATTTTCTGAGGCAATTTTTGGAGCTGAAAAGGAATTTGAGCTTTCACATTTGGAAAAATGTGAAGCTTGTAATGGTACTGGAGCAAAGATTGGCTCCAAGATGAGAATATGTTCGACTTGTGGTGGGAGGGGTCAGGTGATGAGGACTGAACAAACACCTTTTGGCTTGTTCTCACAGGTTTCAGTATGTCCAAACTGTGGAGGGGATGGTGAAGTCATATCTGAATTTTGTCGTAAATGTAATAGTGAAGGACGTATTCGGGTTAAGAAAAATATTAAAGTGAAAGTTCCTCCAGGGGTTAGCCCAGGCAGCATTCTGAGAGTTGCTGGGGAGGGTGATGCTGGACCTCGAGGGGGTCCCCCTGGAGATCTATTTGTGTATCTTGAAGTAGAAGAGATTCCAGGAATTCAAAGAGATGGCATTAATCTCTCTTCAACGATAACAATCAATTATCTGGATGCCATACTAGGGGTTGTTGTCAAGGTAAATACAGTTGAAGGCATTTCTGAGCTACAAATTCCCCCCGGTACCCAACCTGGAGATGTCCTTGTCCTTGAGAGGAAAGGTGCACCAAAATTAAACAAACCATCAATACGTGGTGACCACTTATTTACAGTTAAAGTTATGATACCAAAACGTGTCAGTTTAAAGGAGCGTGAGTTGCTTGAAGAACTTGCTTCACGAGGCAGCAAAACAAGCAGCCGTTCAAAACCCCGTCCTAGCATTCACTCTTCCAAGGGAAGGGCTGAAGATTCTGTGGCTCAAAGTGCTGAAAGTCCAACAGTAGTTGAAGAAAAAACTGAACAGTCAGAAGACCAAGATGACGTATGGAATAAATTGAAGAATTTTGCTGGGTCTGTCGCAAATGGAGCTCTGAAGTGGCTAAAAGATAACCTGTAG 1506 0.4449 MAIVSFSFRPYLHPPSAPSSSSSSSSSSSSFLCGGVHLRTHKNFISIHSPSHFSSSTLNSRSSSRSFRTAIAASGDYYATLGVSKSATNKEIKVAYRKLARQYHPDVNKEPGAIDKFKEISAAYEVLSDDKKRALYDQYGEAGVKSTVGGANAYTTNPFDLFETFFGPSMGGFAGMDPTGFGTRRRSTVTKGQDIRYDILLEFSEAIFGAEKEFELSHLEKCEACNGTGAKIGSKMRICSTCGGRGQVMRTEQTPFGLFSQVSVCPNCGGDGEVISEFCRKCNSEGRIRVKKNIKVKVPPGVSPGSILRVAGEGDAGPRGGPPGDLFVYLEVEEIPGIQRDGINLSSTITINYLDAILGVVVKVNTVEGISELQIPPGTQPGDVLVLERKGAPKLNKPSIRGDHLFTVKVMIPKRVSLKERELLEELASRGSKTSSRSKPRPSIHSSKGRAEDSVAQSAESPTVVEEKTEQSEDQDDVWNKLKNFAGSVANGALKWLKDNL 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2161g00002 501 ProSiteProfiles Zinc finger CR-type profile. 209 291 IPR001305 GO:0031072|GO:0051082
Pral2161g00002 501 FunFam Putative Mitochondrial DnaJ chaperone 280 328 - -
Pral2161g00002 501 ProSiteProfiles dnaJ domain profile. 76 140 IPR001623 -
Pral2161g00002 501 PRINTS DnaJ domain signature 132 151 IPR001623 -
Pral2161g00002 501 PRINTS DnaJ domain signature 78 96 IPR001623 -
Pral2161g00002 501 PRINTS DnaJ domain signature 112 132 IPR001623 -
Pral2161g00002 501 PRINTS DnaJ domain signature 96 111 IPR001623 -
Pral2161g00002 501 Pfam DnaJ C terminal domain 195 413 IPR002939 -
Pral2161g00002 501 FunFam Chaperone protein dnaJ A6 chloroplastic 73 178 - -
Pral2161g00002 501 MobiDBLite consensus disorder prediction 450 465 - -
Pral2161g00002 501 NCBIfam molecular chaperone DnaJ 76 429 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Pral2161g00002 501 CDD DnaJ 76 129 IPR001623 -
Pral2161g00002 501 Hamap Chaperone protein DnaJ [dnaJ]. 73 485 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Pral2161g00002 501 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 209 289 IPR036410 -
Pral2161g00002 501 Gene3D - 192 328 - -
Pral2161g00002 501 ProSitePatterns Nt-dnaJ domain signature. 117 136 IPR018253 -
Pral2161g00002 501 Gene3D - 222 286 - -
Pral2161g00002 501 CDD DnaJ_C 193 415 - -
Pral2161g00002 501 SMART dnaj_3 75 132 IPR001623 -
Pral2161g00002 501 FunFam Chaperone protein dnaJ A6 chloroplastic 222 286 - -
Pral2161g00002 501 FunFam Chaperone protein dnaJ 1, mitochondrial 333 440 - -
Pral2161g00002 501 Pfam DnaJ central domain 222 286 IPR001305 GO:0031072|GO:0051082
Pral2161g00002 501 SUPERFAMILY HSP40/DnaJ peptide-binding domain 190 334 IPR008971 GO:0006457|GO:0051082
Pral2161g00002 501 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 28 437 - -
Pral2161g00002 501 MobiDBLite consensus disorder prediction 427 477 - -
Pral2161g00002 501 Gene3D DnaJ domain 73 176 IPR036869 -
Pral2161g00002 501 Gene3D - 338 430 - -
Pral2161g00002 501 Pfam DnaJ domain 76 137 IPR001623 -
Pral2161g00002 501 SUPERFAMILY Chaperone J-domain 74 181 IPR036869 -
Pral2161g00002 501 SUPERFAMILY HSP40/DnaJ peptide-binding domain 339 424 IPR008971 GO:0006457|GO:0051082
Pral2161g00002 501 CDD DnaJ_zf 222 286 IPR001305 GO:0031072|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2161g00002 Pral-Chr2161 11438 18481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2161g00002 77 182 C2H2 Transcription Factor Family AT1G74250 36.975 9.09e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2161g00002 K03686 - gmx:100798567 724.161