Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral215g00003 ATGGCTCGCGCTACGAACTGGCTGTCATTTTCGTTGTCGCCGATGGAAATGCTGAGGTCCTCCGATTCTCAGTTCGTTCAATACGACAACCTCTCTGCTAACCATCCCTCTCACTACTTTGTCGATAATTTCTATGGCAATGGTTGGGCGAATCTCAGGTCGCAAGCAGATTACTACTGCCAAGTAGAGCAAAATCGAAGCGGAGAGAGCTTGGCGGGCCCACAAAATCACAACGACGGGGCGCCGAAGCTGGAAGATTTTCTGGGCTACTCCGATAGCCAAACGGAGACGCAAGATTCGTCACTGACGCAGATATACGAGCAGGGAGGCGGCGGCGCCGGCTACTTCAGCGACCCGCAAGATCTGAAAGCGATCGCCGGGTTTCAAGCCTTCTCTGCGAACTCCGGCTCCGAGGTGGAAGACTCAGCTTCCATCGCCAAGACTGCTCATCATGCTCCTTGTGGGGAGTTCGCGATCGAGTCGTCCGGGAACGACGTGGCGTTCTCCGGCTGCGCCACGGGTGCTTTGTCCCTCGGCGTCTCACAAAGTCGTGAGAAAGCCATTGTTCCGGTGGACTCAGATAGCTCGAAGAAAGTAGCCGATACTTTTGGTCAGCGAACTTCAATCTACAGAGGCGTTACAAGACACCGATGGACGGGAAGATATGAAGCGCATCTATGGGATAACAGTTGCAGAAGAGAGGGTCAAGCCAGGAAAGGACGTCAAGTGTACCTGGGTGGGTATGACAAAGAAGACAAGGCTGCGAGGGCTTATGATTTGGCAGCTCTAAAGTATTGGGGTCCGACTGCTACCACTAACTTTCCTGTTTCGAATTACACAAAGGAATTGGAGGAGATGAAACATGTGACAAAGCAAGAGTTTATTGCTTCACTGAGAAGGAAAAGTAGCGGTTTTTCTAGAGGAGCTTCTATATACAGGGGCGTAACAAGGCATCATCAGCAAGGTCGCTGGCAAGCAAGAATTGGTCGTGTTGCAGGAAACAAAGATCTGTACCTTGGAACGTTTGCTACTGAAGAGGAAGCCGCAGAGGCATACGATATTGCTGCCATTAAATTCAGAGGTGCGGGCGCTGTGACGAACTTCGAGATGAGCAGATATGATGTGGAAGCGATTATGAAGAGTACTCTGCCAGTTGGTGGATCAGCCAAACGCGCAAAACATTCCCCAGAATCAGAACACAATATCCAGCAACCCCAATATCCAAACGCGATTAATGCCACCGCTGGAACCATCAGTTTCACGCCCATTCAACCTGCACTTGCTTCTTCTATCCCTTGTGGTATTCCCTATGATTCTGCAGCAGCACATTACCACCACAATCTGTTGCACCAGTTTTATCCTACTAGCAGCTCTGGTACTGTGGATTCAACCGTATCTGTGACTGCGTCTGTTGCGGCGGCTCCGATGACTGCGCTGCCGGCTTCTGCTGCTGAGTTTTTTCTGTGGCCTCATCAGCCATGTTGA 1485 0.5098 MARATNWLSFSLSPMEMLRSSDSQFVQYDNLSANHPSHYFVDNFYGNGWANLRSQADYYCQVEQNRSGESLAGPQNHNDGAPKLEDFLGYSDSQTETQDSSLTQIYEQGGGGAGYFSDPQDLKAIAGFQAFSANSGSEVEDSASIAKTAHHAPCGEFAIESSGNDVAFSGCATGALSLGVSQSREKAIVPVDSDSSKKVADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEDKAARAYDLAALKYWGPTATTNFPVSNYTKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGAGAVTNFEMSRYDVEAIMKSTLPVGGSAKRAKHSPESEHNIQQPQYPNAINATAGTISFTPIQPALASSIPCGIPYDSAAAHYHHNLLHQFYPTSSSGTVDSTVSVTASVAAAPMTALPASAAEFFLWPHQPC 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral215g00003 494 PRINTS Ethylene responsive element binding protein signature 210 221 IPR001471 GO:0003700|GO:0006355
Pral215g00003 494 PRINTS Ethylene responsive element binding protein signature 351 371 IPR001471 GO:0003700|GO:0006355
Pral215g00003 494 Gene3D AP2/ERF domain 311 371 IPR036955 GO:0003700|GO:0006355
Pral215g00003 494 Gene3D AP2/ERF domain 209 277 IPR036955 GO:0003700|GO:0006355
Pral215g00003 494 SMART rav1_2 209 281 IPR001471 GO:0003700|GO:0006355
Pral215g00003 494 SMART rav1_2 311 375 IPR001471 GO:0003700|GO:0006355
Pral215g00003 494 FunFam AP2-like ethylene-responsive transcription factor 310 371 - -
Pral215g00003 494 ProSiteProfiles AP2/ERF domain profile. 311 369 IPR001471 GO:0003700|GO:0006355
Pral215g00003 494 SUPERFAMILY DNA-binding domain 208 277 IPR016177 GO:0003677
Pral215g00003 494 FunFam AP2-like ethylene-responsive transcription factor ANT 208 277 - -
Pral215g00003 494 CDD AP2 310 371 IPR001471 GO:0003700|GO:0006355
Pral215g00003 494 ProSiteProfiles AP2/ERF domain profile. 209 275 IPR001471 GO:0003700|GO:0006355
Pral215g00003 494 SUPERFAMILY DNA-binding domain 310 371 IPR016177 GO:0003677
Pral215g00003 494 CDD AP2 208 277 IPR001471 GO:0003700|GO:0006355
Pral215g00003 494 Pfam AP2 domain 209 267 IPR001471 GO:0003700|GO:0006355
Pral215g00003 494 Pfam AP2 domain 311 361 IPR001471 GO:0003700|GO:0006355
Pral215g00003 494 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 75 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral215g00003 Pral-Chr215 29589 33886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral215g00003 70 492 AP2-EREBP Transcription Factor Family AT5G10510 56.522 1.05e-160 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pral215g00003 AP2 5.9e-12 CL0081