Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2157g00004 ATGAACAGAAATTCCCACAATTTCACACTCTTACCTGGTGCTCGCCGATCTGTCGCAAGAGCTCATGATACCCATAGTGGCTACGATGAGGCGCCTCACTTTTACCGATCTCGTTCTGCCCAATCTACTCCTGATTACAGGATTTTAGGCGTGCAAGATACCCCAAGGTTGATGGGAGACAGAACACTTTCAGGACTCAATCGCACACCCAGTTTTCCAGCACAACCACATCTCAGACAACAAATGAATGGATCCAATGGAGGCATGAGAAGGGGGTTGAACCCCGTGTTCGGGGAGATTGTCCAGCAGTCGCCTCCAAGAACCGCAGAAAATCCCAATTCAGCAGTTTTGAGCAAGCTTAAGAAAGAAATATACGAGCCCCCAAAGATTTTACCGAAGAGAGTGAGTCTGTGTTATAAAGACAGTGTTGCGAATGCTTTAAAAGAGAGAGATAGGGAAAAGCAAGAACGTCGCAAGAGGTGTGCTATTTGCTTGGAAGATTTTGAACCTCGTGAGGAAGTGATGCTCACACCATGCAAACATGTGTTTCATGAGGATTGTATTGTTCCATGGCTAAGAAGCAAAGGCCAGTGCCCTGTTTGTAGATTTGTGATTTGTGAGGAGATGAATGAGCACGCTTCATCCTTCAACGACGATATTGCCATGCTGGGACCCAATGACCACCTAATTGCAGCCGAGCTTCTGTCAATTTTTGGAGCCATGGAACAAGCTCTCGAAATGGGCGGTTGA 750 0.4667 MNRNSHNFTLLPGARRSVARAHDTHSGYDEAPHFYRSRSAQSTPDYRILGVQDTPRLMGDRTLSGLNRTPSFPAQPHLRQQMNGSNGGMRRGLNPVFGEIVQQSPPRTAENPNSAVLSKLKKEIYEPPKILPKRVSLCYKDSVANALKERDREKQERRKRCAICLEDFEPREEVMLTPCKHVFHEDCIVPWLRSKGQCPVCRFVICEEMNEHASSFNDDIAMLGPNDHLIAAELLSIFGAMEQALEMGG 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2157g00004 249 Pfam Ring finger domain 160 202 IPR001841 -
Pral2157g00004 249 FunFam RING/U-box superfamily protein 145 219 - -
Pral2157g00004 249 ProSiteProfiles Zinc finger RING-type profile. 161 202 IPR001841 -
Pral2157g00004 249 SMART ring_2 161 201 IPR001841 -
Pral2157g00004 249 SMART ringv_2 160 202 IPR011016 GO:0008270
Pral2157g00004 249 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 65 203 - -
Pral2157g00004 249 SUPERFAMILY RING/U-box 160 209 - -
Pral2157g00004 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 218 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2157g00004 Pral-Chr2157 10861 12612 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2157g00004 111 249 C3H Transcription Factor Family AT3G58720 44.521 7.11e-35 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2157g00004 - - pcin:129315451 375.941