Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2150g00110 ATGAAGGTGGAAGGCGAGAGTAAGCGGAGGACACATCAGAGTGAAGATGAGATGGGCATAAGGAAGGGCCCATGGACCGTGGAAGAGGACACCATTCTGGTCAACTACATCGCCATCCACGGCGAGGGTCGCTGGAATTCCGTCGCCCGCTCTGCCGGTCTGAAGAGAACGGGCAAAAGTTGCAGGTTAAGATGGCTGAACTACTTGCGTCCCGACGTTCGGCGTGGAAATATCACGCTGCAGGAACAGATAGTAATTCTTGATCTGCACTCTCGGTGGGGAAATAGGTGGTCGAAAATAGCGCAGCACTTGCCAGGAAGAACAGACAATGAGATTAAGAATTATTGGAGGACGAGGGTGATGAAGCAAGCGAAGCAGCTCAAGTGCGATGTCAACAGCAAGCAGTTCAGAGACACCATGCGCTACGTGTGGATGCCCCGCTTGCTGGAGCGGATACGGGCGGCCGCATCCGAATACCAACCGAACTGCCACCCCATCCCCGCCAACCCGAATCACTCCTCCGTCACGCCTCTGAATATCCAGTTCAACGAACCCCCTTCGTCCCCATGGCAGGCTCATCATCATGTTTCGGACGGTTCCCCAGAGGGGTTGGAAGCCTGCCCACGGGTTGTATCCGAGCAGGGAAACGGTGCCTTGGGTGGCGGCGGTGGGGAGTGGGCCGAAACACTGTGGAGTGACGACAATATTTGGTTTTTGCAACAACAACTTTTCGAAGATGTGTAA 744 0.5484 MKVEGESKRRTHQSEDEMGIRKGPWTVEEDTILVNYIAIHGEGRWNSVARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLQEQIVILDLHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVMKQAKQLKCDVNSKQFRDTMRYVWMPRLLERIRAAASEYQPNCHPIPANPNHSSVTPLNIQFNEPPSSPWQAHHHVSDGSPEGLEACPRVVSEQGNGALGGGGGEWAETLWSDDNIWFLQQQLFEDV 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2150g00110 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 73 IPR017930 -
Pral2150g00110 247 Gene3D - 78 142 - -
Pral2150g00110 247 SMART sant 21 71 IPR001005 -
Pral2150g00110 247 SMART sant 74 122 IPR001005 -
Pral2150g00110 247 FunFam Myb transcription factor 22 74 - -
Pral2150g00110 247 Gene3D - 20 75 - -
Pral2150g00110 247 FunFam MYB transcription factor 79 142 - -
Pral2150g00110 247 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Pral2150g00110 247 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Pral2150g00110 247 CDD SANT 24 69 IPR001005 -
Pral2150g00110 247 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Pral2150g00110 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 124 IPR017930 -
Pral2150g00110 247 MobiDBLite consensus disorder prediction 1 21 - -
Pral2150g00110 247 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 18 164 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pral2150g00110 247 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Pral2150g00110 247 CDD SANT 79 118 IPR001005 -
Pral2150g00110 247 SUPERFAMILY Homeodomain-like 18 116 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2150g00110 Pral-Chr2150 504398 506491 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2150g00110 15 247 MYB Transcription Factor Family AT2G47190 52.157 2.51e-84 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral2150g00110 Myb_DNA-binding 2.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2150g00110 K09422 - gmx:778065 297.36