Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2150g00080 ATGGGGGGGCACTCTTGCTGCTATAAGCAGAAGCTTCGGAAGGGTCTATGGTCCCCTGAGGAGGATGAAAAACTTTTGAGACATATTAATAAGCATGGCCATGGCTGTTGGAGCTCTGTTCCTAAGCAAGCCGGCCTGCAGAGGTGTGGTAAGAGCTGTAGGCTGAGGTGGATCAATTACCTGAGGCCTGATTTGAAGAGGGGAACGTTCTCACAGGAAGAAGAAAACCTTATAATTGAACTTCACGCAGTATTGGGAAATAGATGGTCTCAAATTGCGGCGCAATTGCCCGGAAGAACTGACAATGAAATAAAGAATCTGTGGAATTCTTGCTTGAAGAAGAAACTGAGGCAAAGAGGCATCGACCCTGTTACCCACAAACTACTCTCTGAGGTTCAGAATGGAGACGACAAAGAGAAGGAGCTCAATGAATTGAAAGTCCTCAAATCAGAGAGCCCAAGTTCAGATGCCACAAAAGCATATACACCCACTATGGAAGGGTGTTCCAGTTTCAAGTATAACAATAGCACAAGTAACACCAATTTGCCAACCAACTGTAGCAGCAAAGAATTGCTTCCAGGTGGGTTTAATACGAGCCACACCACTTCAGGACTGATGGGAAATTTCCCACTTCAGATGAATTATGCATCCACTGGTGATACCTTCTTTGCCAATTCAAACCCTTCTTCCCAATGGTTCACCCAAACAGGAAGACCAACATTCAATATGAACCCTGAATTTGCCTCCAATTCCATGTCCACCGTTCTTGCGCCTCCACCCACTTCATTTCTTGGTGTTCCCTGCGATGATGTTTGTGCAGCCTCTTGCGCTGAGAATGCATCGCAATCTCATTTCTGGGGATTGACAGATTCCGAG 876 0.4589 MGGHSCCYKQKLRKGLWSPEEDEKLLRHINKHGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKLLSEVQNGDDKEKELNELKVLKSESPSSDATKAYTPTMEGCSSFKYNNSTSNTNLPTNCSSKELLPGGFNTSHTTSGLMGNFPLQMNYASTGDTFFANSNPSSQWFTQTGRPTFNMNPEFASNSMSTVLAPPPTSFLGVPCDDVCAASCAENASQSHFWGLTDSE 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2150g00080 292 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Pral2150g00080 292 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pral2150g00080 292 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pral2150g00080 292 CDD SANT 17 61 IPR001005 -
Pral2150g00080 292 Gene3D - 11 67 - -
Pral2150g00080 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pral2150g00080 292 SMART sant 13 63 IPR001005 -
Pral2150g00080 292 SMART sant 66 114 IPR001005 -
Pral2150g00080 292 Gene3D - 68 146 - -
Pral2150g00080 292 PANTHER MYB DOMAIN PROTEIN 55 1 233 - -
Pral2150g00080 292 FunFam MYB transcription factor 68 140 - -
Pral2150g00080 292 FunFam Myb transcription factor 11 67 - -
Pral2150g00080 292 CDD SANT 69 109 IPR001005 -
Pral2150g00080 292 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pral2150g00080 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pral2150g00080 292 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2150g00080 Pral-Chr2150 327987 329285 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2150g00080 1 238 MYB Transcription Factor Family AT4G01680 62.343 5.93e-94 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral2150g00080 Myb_DNA-binding 1.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2150g00080 K09422 - gmx:100782199 364.385