Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2150g00066 ATGCTTACCATGGTTAGTCAAGCTGTGCCAAATGTTGGTGACCACCCTGCTCTTGCAATGGGAACTGACATTAGAAGCATTTTCACTGGCCAAAGTGCCTCTGCCTTGCAGAAGGCAATAGGATTTGGCGAGGTTTCACTTCTTAACCCCATCCTTGTCCATTGCAAGACTTCTGGGAAGCCTTTTTATGCAATTGTCCATCGTGTCACTGGTAGCATGGTCATTGACTTTGAGCCTGTCAAGCCTTATGAAGTTCCCATGACTGCAGCAGGTGCCCTCCAATCTTACAAGCTTGCCTCCAGAGCAATTACCCGATTACAAGCATTGCCTAGTGGGAGCATGGAAAGGCTCTGTGATGTAATGGCTCATGAGGTTTTTGAACTCACTGGTTATGACAGGGTGATGGTGTATAAATTTCATGAAGACGATCATGGAGAAGTGGTAGCTGAGGTCAAAAAGCCAGGCTTACAGTCATATCTGGGTTTGCATTATCCAGCCACTGATGTTCCACAAGCTACACGCTTTTTATTCATGAAGAACAAGGTTCGTATGATTGTTGATTGTCGGGCAAAACATGTGAAGGTGCTTCAAGATGAAAACCTTCCATATGATTTAACCTTCTGTGGTTCAACCTTGAGGGCTCCTCATAGTTGCCATGTGCAATATATGCAGAACATGGATCTAATTGCCTCCCTGGTTATGGCAGTTGTGGTCAATGACAGAGATGAAGATGGTGATAGCTCCGATTCTGTACAGCCACAGAAGAGAAGGAGACTCTGGGGCTTAGTAGTTTGCCATAACTATACCCCCCGGTTTGTTCCTTTTCCTCTTAGGTATGCTTGTGAGTTCCTGGCTCAAGTATTTGCTATCCACGTTAACAAAGAATTAGAGTTGGAATATCAGATTATTGAGAAGAACATCCTGCGAACCCAGGGTTTCCTGTGTGATATGCTGATGCGTGATGAACCCCTAGGTATTATATCACAGAGCCCAAATATAATGGATCTCGTAAAATGTGATGGGGCTTGCCTCTTGTATAATGGCAAGGTATGGAGATTAGGAGTAACGCCAAGTGAATCCCAGATACGAGAGATAGCTTTATGGCTGTCAGAGTGTCATAAGGATTCCACTGGTTTTAATACAGATAGCTTGTCTGATGCAGGTTTCCCTGGGGCTGCTGCTCTTGGTGATATGGTATGTGGAGTGGCAGCGGTGAGAATAAACTCCAAAGACATGGTTTTATGGTTTCGGTCACATGCTGCTGCAGAAATCCGATGGGGTGGTGCAAAGCATCAACCCGGTGAAGAGGATGATGGTAGAAGGATGCATCCAAGATCATCATTCAAGGCATTCCTTGAAGTGGTGAAATCAAGAAGTTTGCCATGGAAAGACTATGAAATAGATGCTATCCACTCCTTGCAGCTCATATTGAGAAATACATTCAAAGAGACACAGATTATGGACACGAGCACAAATGCAATTAATACAAGACTAAGTGTTTTGAAAATTAAAGGTATGAAAGAACTGGAAGTAGTGACAAGTGAGATGGTTCGGTTAATCGAAACAGCAACAGTACCAATTTTGGCGGTTGATGTTGATGGGCTGGTCAATGGGTGGAATACAAAAATTGCTGAGTTGACGGGTCTTCCAGTCGATGAAGCTATTGGACAGCATTTGCTCACACTTATTGAAGATTCTTCAATTGACAGAGTCAAGAAGATGCTTGCCATGGCACTGCAAGGTGAAGAAGAGCAGAATGTTCAATTTGAGATCAAGGCACATGGGTCTAAGGCTGACTTTACTCCTGTCAGCTTAGTAGTTAATGCCTGTGCAAGTAGGGATCTTCAAGATAATGTTGTTGGGGTTTGTTTTGTGGCTCAAGATATAACTGCTCAGAAGACTGTTATGGACAAATTCACTCGAATTGAAGGTGATTACAAGGCAATTGTACAGAACCCAAATCCTTTGATTCCCCCAATATTTGGTACAGATGAATTTGGCTGGTGTTGCGAATGGAATCTGGCTATGACAAAGTTAACTGGATGGAAGCGAGAGGAGGTGATGAATAAGATGCTTTTAGGAGAAGTGTTTGGTACCCATATGGCTTGTTGTCGTCTCAAGAATCAAGAAGCTTTTGTTAATTTTGGTATTGTACTTAATAAAGCCATGACTGGTTTGGAAACGGAGAAGGGTGCTTTTGGTTTCTTTGCTCGGAATGGCAAGTACGTAGAATGCCTGCTTTCTGTGAGCATGAAATTGGATTCAGAGGGAGCAATTACTGGGGTCTTCTGCTTCTTGCAACTCGCAAGCCCAGAGCTGCAACAAGCACTACATATTCAGCGCCTTTCTGAAAAAACTGCCATGAAGAGACTAGAAGCTTTAACTTACATGAAAAGGCAGATTTGGAATCCTTTATGCGGGATTATGTTCTCCCGTAAAATGTTGGATGATACTGAGTTAGGAACTGAACAAAAACAGCTTCTGCACATTAGTGCTCAGTGCCAGCGCCAGCTGAGAAAAATCCTTGATGACTCAGATCTTGACAGCATCATTGATGGGTACTTGGATCTGGAGATGGTTGAATTCACTCTGCATGATGTATTGGTTGCCTCCTTTAGTCAAGTAATGACGAAGAGCAATGCAAAGGGTATCGGAATAGTGAATGATGTTGAAGATCGCATCGGGGCAGAAATCTTATATGGTGATGGTCTTAGACTTCAGCAGATCGTAGCTGATTTCTTATCTATTTCCATCAGTTTTACATCGTCTGGGGGCCAGGTTGTTGTGGCAGCCTCTCTAACCAAGAACCAGTTAGGAAAATCTGTCCAGCTTGCCAATTTGGAGCTCAGCATAACACATGCTGGTAGTGGGGTGACAGAAGCATTACTGAACCAGATGTTTGGAAGTGAAGGACATGAATCCGAGGAGGGTATTAGCCTCCTCATCAGCAGAAAGTTGCTAAAGCTCATGAATGGAGATGTGCGTTATCTAAGGAAAGAAGGGAAATCATCTTTCATCTTGTCTGTTGAACTTGCCGTGGCCCACAAATGA 3051 0.4346 MLTMVSQAVPNVGDHPALAMGTDIRSIFTGQSASALQKAIGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSMVIDFEPVKPYEVPMTAAGALQSYKLASRAITRLQALPSGSMERLCDVMAHEVFELTGYDRVMVYKFHEDDHGEVVAEVKKPGLQSYLGLHYPATDVPQATRFLFMKNKVRMIVDCRAKHVKVLQDENLPYDLTFCGSTLRAPHSCHVQYMQNMDLIASLVMAVVVNDRDEDGDSSDSVQPQKRRRLWGLVVCHNYTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQIIEKNILRTQGFLCDMLMRDEPLGIISQSPNIMDLVKCDGACLLYNGKVWRLGVTPSESQIREIALWLSECHKDSTGFNTDSLSDAGFPGAAALGDMVCGVAAVRINSKDMVLWFRSHAAAEIRWGGAKHQPGEEDDGRRMHPRSSFKAFLEVVKSRSLPWKDYEIDAIHSLQLILRNTFKETQIMDTSTNAINTRLSVLKIKGMKELEVVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLPVDEAIGQHLLTLIEDSSIDRVKKMLAMALQGEEEQNVQFEIKAHGSKADFTPVSLVVNACASRDLQDNVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNLAMTKLTGWKREEVMNKMLLGEVFGTHMACCRLKNQEAFVNFGIVLNKAMTGLETEKGAFGFFARNGKYVECLLSVSMKLDSEGAITGVFCFLQLASPELQQALHIQRLSEKTAMKRLEALTYMKRQIWNPLCGIMFSRKMLDDTELGTEQKQLLHISAQCQRQLRKILDDSDLDSIIDGYLDLEMVEFTLHDVLVASFSQVMTKSNAKGIGIVNDVEDRIGAEILYGDGLRLQQIVADFLSISISFTSSGGQVVVAASLTKNQLGKSVQLANLELSITHAGSGVTEALLNQMFGSEGHESEEGISLLISRKLLKLMNGDVRYLRKEGKSSFILSVELAVAHK 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2150g00066 1016 SMART HKATPase_4 901 1013 IPR003594 -
Pral2150g00066 1016 Gene3D - 301 474 IPR043150 -
Pral2150g00066 1016 SMART gaf_1 113 306 IPR003018 GO:0005515
Pral2150g00066 1016 PANTHER OS08G0260000 PROTEIN 19 850 - -
Pral2150g00066 1016 SUPERFAMILY PYP-like sensor domain (PAS domain) 518 625 IPR035965 -
Pral2150g00066 1016 PRINTS Phytochrome signature 213 234 IPR001294 GO:0006355|GO:0009584
Pral2150g00066 1016 PRINTS Phytochrome signature 326 346 IPR001294 GO:0006355|GO:0009584
Pral2150g00066 1016 PRINTS Phytochrome signature 627 647 IPR001294 GO:0006355|GO:0009584
Pral2150g00066 1016 PRINTS Phytochrome signature 128 147 IPR001294 GO:0006355|GO:0009584
Pral2150g00066 1016 PRINTS Phytochrome signature 515 531 IPR001294 GO:0006355|GO:0009584
Pral2150g00066 1016 PRINTS Phytochrome signature 411 430 IPR001294 GO:0006355|GO:0009584
Pral2150g00066 1016 PRINTS Phytochrome signature 28 50 IPR001294 GO:0006355|GO:0009584
Pral2150g00066 1016 PRINTS Phytochrome signature 607 624 IPR001294 GO:0006355|GO:0009584
Pral2150g00066 1016 PRINTS Phytochrome signature 444 462 IPR001294 GO:0006355|GO:0009584
Pral2150g00066 1016 PRINTS Phytochrome signature 534 549 IPR001294 GO:0006355|GO:0009584
Pral2150g00066 1016 Pfam PAS fold 645 767 IPR013767 GO:0006355
Pral2150g00066 1016 Pfam PAS fold 515 629 IPR013767 GO:0006355
Pral2150g00066 1016 NCBIfam PAS domain S-box protein 519 635 IPR000014 -
Pral2150g00066 1016 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 113 286 IPR016132 -
Pral2150g00066 1016 SUPERFAMILY PYP-like sensor domain (PAS domain) 659 765 IPR035965 -
Pral2150g00066 1016 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 901 1011 IPR003594 -
Pral2150g00066 1016 ProSiteProfiles PAC domain profile. 585 641 IPR000700 -
Pral2150g00066 1016 ProSiteProfiles Histidine kinase domain profile. 796 1015 IPR005467 -
Pral2150g00066 1016 CDD PAS 656 767 IPR000014 -
Pral2150g00066 1016 SUPERFAMILY PYP-like sensor domain (PAS domain) 13 81 IPR035965 -
Pral2150g00066 1016 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 851 1004 IPR036890 -
Pral2150g00066 1016 Gene3D PAS domain 658 770 - -
Pral2150g00066 1016 SMART HisKA_10 789 854 IPR003661 GO:0000155|GO:0007165
Pral2150g00066 1016 Gene3D PAS domain 505 643 - -
Pral2150g00066 1016 Pfam PAS fold 16 80 IPR013654 GO:0006355
Pral2150g00066 1016 Pfam Phytochrome region 309 484 IPR013515 GO:0006355|GO:0009584
Pral2150g00066 1016 SUPERFAMILY GAF domain-like 93 293 - -
Pral2150g00066 1016 ProSiteProfiles PAS repeat profile. 512 582 IPR000014 -
Pral2150g00066 1016 CDD PAS 523 629 IPR000014 -
Pral2150g00066 1016 SUPERFAMILY GAF domain-like 304 483 - -
Pral2150g00066 1016 Gene3D PAS domain 4 216 - -
Pral2150g00066 1016 ProSitePatterns Phytochrome chromophore attachment site signature. 213 222 IPR013516 -
Pral2150g00066 1016 Gene3D - 852 1015 IPR036890 -
Pral2150g00066 1016 Gene3D - 94 457 IPR029016 -
Pral2150g00066 1016 ProSiteProfiles PAS repeat profile. 645 697 IPR000014 -
Pral2150g00066 1016 FunFam Phytochrome 301 430 - -
Pral2150g00066 1016 Pfam GAF domain 113 296 IPR003018 GO:0005515
Pral2150g00066 1016 SMART pas_2 644 713 IPR000014 -
Pral2150g00066 1016 SMART pas_2 514 580 IPR000014 -
Pral2150g00066 1016 FunFam Phytochrome 508 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2150g00066 Pral-Chr2150 240721 250656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2150g00066 1 1016 Histidine Kinase Gene Family AT1G09570 74.926 0.0 1619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2150g00066 K12120 - gmx:100790763 1678.69