Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2150g00064 ATGCTCACTAACGAGGCTGGTGAAGTAACTAGTCATTTGCAAGGCATGTTTACCCGGACAGTCAGACTTCTAGAAGCTGGAATGGAGCCAGTATATGTGTTTGATGGGAAGCCGCCTGATCTGAAGCAGCAGGAGCTGGCTAAACGTTACTCAAAGAGGGCTGAAGCTTATGAGGATTTGTCAGAGGCCATTGAGTCTGGCAACAGGGAAGACATTGAAAAATTCAGTAAACGGACTGTCAAGGTGACGAAGCAGCATAGTGAAGGTTGTAAAAGACTTTTATCACTCATGGGAGTGCCTGTTATTGAGGCGCCATCAGAAGCTGAAGCACAGTGTGCTGCACTTTGCAAATCTGGAAAGGTTTATGCAGTGGCTTCTGAAGACATGGATTCGTTAACATTTGGAGCTCCTAGATTTCTTCGCCATCTAATGGTCCCTAGCTCAAAGAAAGTTCCAGTTATGGAATTCGAAGTTGCCAAGGTCACTATATTGGAGGAGCTAAATCTGACCATGGATCAGTTTATTGACTTGTGTATTCTTTCTGGGTGTGATTATTGTGGAAGCATTCGAGGTGTTGGTGGTAAGACTGCTTTGAAGCTCATTCACCAGTATAGCTGTATAGAGAACATATTGAAGAACATCAATAAAGAGAGGTACCAGATACCTGATGATTGGCCATATCAGGAGGTTAGGCAGCTTTTTAAGGAACCAACTGTCTTAGCTGAAGAAAGGCAACTAGATCTTAAGTGGACTGCTCCCGATGAAGAAGGTTTAGTGACATTTCTGGTAAATGAGAACGGATTCAACAGAGAGAGGGTGACAAAGGCGATGGAAATAATTAAAGCTGCAAAGAACAAGTCGTCACAAGGCCAACCAGAATCTGTTTTTAAGCCAATGGCCAACTGCTCTACACCCATTAAACGGAAGGAAAAAAAAGGTAGTTGGGGAGGTATTACCACACAAGGCTCCGGGTTTAAAATTGTTATTTTGTTTTCTGTGGATGTTGATCTATCTGAGGATAAGCCAATGATTGTCATGAGGCACAGAGGGAGCAAATGCATGCTTAGATCCTTTAAACCAGCAACTAAGCGTAAGGTTTTATCCCCACAACTTTATAACTGGTCAAGGCCCATGGTTATCGGCAACCTGGGCATTGCCTCCGCGGATTTCAAGCTATCTGTCATGATGTAG 1191 0.4358 MLTNEAGEVTSHLQGMFTRTVRLLEAGMEPVYVFDGKPPDLKQQELAKRYSKRAEAYEDLSEAIESGNREDIEKFSKRTVKVTKQHSEGCKRLLSLMGVPVIEAPSEAEAQCAALCKSGKVYAVASEDMDSLTFGAPRFLRHLMVPSSKKVPVMEFEVAKVTILEELNLTMDQFIDLCILSGCDYCGSIRGVGGKTALKLIHQYSCIENILKNINKERYQIPDDWPYQEVRQLFKEPTVLAEERQLDLKWTAPDEEGLVTFLVNENGFNRERVTKAMEIIKAAKNKSSQGQPESVFKPMANCSTPIKRKEKKGSWGGITTQGSGFKIVILFSVDVDLSEDKPMIVMRHRGSKCMLRSFKPATKRKVLSPQLYNWSRPMVIGNLGIASADFKLSVMM 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2150g00064 396 SMART xpgineu 95 169 IPR006086 GO:0004518
Pral2150g00064 396 SMART HhH_4 171 204 IPR008918 GO:0003677|GO:0003824
Pral2150g00064 396 Hamap Flap endonuclease 1 [fen]. 1 297 IPR023426 GO:0016788
Pral2150g00064 396 ProSitePatterns XPG protein signature 2. 98 112 IPR019974 GO:0016788
Pral2150g00064 396 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 94 111 IPR006084 -
Pral2150g00064 396 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 115 135 IPR006084 -
Pral2150g00064 396 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 30 49 IPR006084 -
Pral2150g00064 396 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 174 189 IPR006084 -
Pral2150g00064 396 FunFam Flap endonuclease 1 1 172 - -
Pral2150g00064 396 FunFam Flap endonuclease 1 169 236 - -
Pral2150g00064 396 Gene3D - 172 236 - -
Pral2150g00064 396 SMART xpgn3 1 56 IPR006085 GO:0004518
Pral2150g00064 396 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 169 303 IPR036279 -
Pral2150g00064 396 SUPERFAMILY PIN domain-like 2 184 IPR029060 -
Pral2150g00064 396 Pfam XPG N-terminal domain 8 56 IPR006085 GO:0004518
Pral2150g00064 396 CDD PIN_FEN1 1 282 - -
Pral2150g00064 396 Gene3D - 1 171 - -
Pral2150g00064 396 CDD H3TH_FEN1-Euk 172 240 - -
Pral2150g00064 396 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 10 314 IPR006084 -
Pral2150g00064 396 Pfam XPG I-region 98 184 IPR006086 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2150g00064 Pral-Chr2150 232860 237378 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2150g00064 1 374 Core DNA Replication Machinery Family AT5G26680 68.717 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2150g00064 K04799 - cave:132187694 532.332