Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2150g00063 ATGGGCGTAAAGGGTTTAACGAAGCTTTTGGCGGATAATGCCCCTAAAGCTGTAAAAGTGCGTAGCTTCCAAAGCTATTTTGGCCGCAAGATTGCCATCGACGCTAGCATGAGCATTTACCAGTTCCTTGTTGTCGTGGGAAGAAGTGGGACTGAGATGCTCACTAACGAGGCTGGTGAAGTAACTAGTCATTTGCAAGGCATGTTTACCCGGACAGTCAGACTTCTAGAAGCTGGAATGGAGCCAGTATATGTGTTTGATGGGAAGCCGCCTGATCTGAAGCAGCAGGAGCTGGCTAAACGTTACTCAAAGAGGGCTGAAGCTTATGAGGATTTGTCAGAGGCCATTGAGTCTGGCAACAGGGAAGACATTGAAAAATTCAGTAAACGGACTGTCAAGGTGACGAAGCAGCATAGTGAAGGTTGTAAAAGACTTTTATCACTCATGGGAGTGCCTGTTATTGAGGCGCCATCAGAAGCTGAAGCACAGTGTGCTGCACTTTGCAAATCTGGAAAGGTTTATGCAGTGGCTTCTGAAGACATGGATTCGTTAACATTTGGAGCTCCTAGATTTCTTCGCCATCTAATGGTCCCTAGCTCAAAGAAAGTTCCAATATTGGAGGAGCTAAATCTGACCATGGATCAGTTTATTGACTTGTGTATTCTTTCTGGGTGTGATTATTGTGGAAGCATTCGAGGTGTTGGTGGTAAGACTGCTTTGAAGCTCATTCACCAGTATAGCTGTATAGAGAACATATTGAAGAACATCAATAAAGAGAGGTACCAGATACCTGATGATTGGCCATATCAGGAGGTTAGGCAGCTTTTTAAGGAACCAACTGTCTTAGCTGAAGAAAGGCAACTAGATCTTAAGTGGACTGCTCCCGATGAAGAAGGTTTAGTGACATTTCTGGTAAATGAGAACGGATTCAACAGAGAGAGGGTGACAAAGGCGATGGAAATAATTAAAGCTGCAAAGAACAAGTCGTCACAAGGCCAACCAGAATCTGTTTTTAAGCCAATGGCCAACTGCTCTACACCCATTAAACGGAAGGAAAAAAAAGGTAGTTGGGGAGGTATTACCACACAAGGCTCCGGGTTTAAAATTGTTATTTTGTTTTCTGTGGATGTTGATCTATCTGAGGATAAGCCAATGATTGTCATGAGGCACAGAGGGAGCAAATGCATGCTTAGATCCTTTAAACCAGCAACTAAGCGTAAGGTTTTATCCCCACAACTTTATAACTGGTCAAGGCCCATGGTTATCGGCAACCTGGGCATTGCCTCCGCGGATTTCAAGCTATCTGTCATGATGTAG 1317 0.4412 MGVKGLTKLLADNAPKAVKVRSFQSYFGRKIAIDASMSIYQFLVVVGRSGTEMLTNEAGEVTSHLQGMFTRTVRLLEAGMEPVYVFDGKPPDLKQQELAKRYSKRAEAYEDLSEAIESGNREDIEKFSKRTVKVTKQHSEGCKRLLSLMGVPVIEAPSEAEAQCAALCKSGKVYAVASEDMDSLTFGAPRFLRHLMVPSSKKVPILEELNLTMDQFIDLCILSGCDYCGSIRGVGGKTALKLIHQYSCIENILKNINKERYQIPDDWPYQEVRQLFKEPTVLAEERQLDLKWTAPDEEGLVTFLVNENGFNRERVTKAMEIIKAAKNKSSQGQPESVFKPMANCSTPIKRKEKKGSWGGITTQGSGFKIVILFSVDVDLSEDKPMIVMRHRGSKCMLRSFKPATKRKVLSPQLYNWSRPMVIGNLGIASADFKLSVMM 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2150g00063 438 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 356 IPR006084 -
Pral2150g00063 438 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Pral2150g00063 438 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Pral2150g00063 438 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Pral2150g00063 438 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Pral2150g00063 438 Gene3D - 13 215 - -
Pral2150g00063 438 SMART xpgineu 147 211 IPR006086 GO:0004518
Pral2150g00063 438 Pfam XPG I-region 150 226 IPR006086 GO:0004518
Pral2150g00063 438 Pfam XPG N-terminal domain 1 108 IPR006085 GO:0004518
Pral2150g00063 438 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
Pral2150g00063 438 CDD PIN_FEN1 4 324 - -
Pral2150g00063 438 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 211 345 IPR036279 -
Pral2150g00063 438 FunFam Flap endonuclease 1 1 217 - -
Pral2150g00063 438 Hamap Flap endonuclease 1 [fen]. 1 339 IPR023426 GO:0016788
Pral2150g00063 438 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788
Pral2150g00063 438 Gene3D - 216 278 - -
Pral2150g00063 438 SMART xpgn3 1 108 IPR006085 GO:0004518
Pral2150g00063 438 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
Pral2150g00063 438 FunFam Flap endonuclease 1 211 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2150g00063 Pral-Chr2150 232726 237378 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2150g00063 1 416 Core DNA Replication Machinery Family AT5G26680 68.396 0.0 598
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2150g00063 K04799 - cave:132187694 604.749