Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2150g00054 ATGGGCGTAAAGGGTTTAACGAAGCTTTTGGCGGATAATGCCCCTAAAGCTGTAAAAGTGCGTAGCTTCCAAAGCTATTTTGGCCGCAAGATTGCCATCGACGCTAGCATGAGCATTTACCAGTTCCTTGTTGTCGTGGGAAGAAGTGGGACTGAGATGCTCACTAACGAGGCTGGTGAAGTAACTAGTCATTTGCAAGGCATGTTTACCCGGACAGTCAGACTTCTAGAAGCTGGAATGGAGCCAGTATATGTGTTTGATGGGAAGCCGCCTGATCTGAAGCAGCAGGAGCTGGCTAAACGTTACTCAAAGAGGGCTGAAGCTTATGAGGATTTGTCAGAGGCCATTGAGTCTGGCAACAGGGAAGACATTGAAAAATTCAGTAAACGGACTGTCAAGGTGACGAAGCAGCATAGTGAAGGTTGTAAAAGACTTTTATCACTCATGGGAGTGCCTGTTATTGAGGCGCCATCAGAAGCTGAAGCACAGTGTGCTGCACTTTGCAAATCTGGAAAGGTTTATGCAGTGGCTTCTGAAGACATGGATTCGTTAACATTTGGAGCTCCTAGATTTCTTCGCCATCTAATGGTCCCTAGCTCAAAGAAAGTTCCAGTTATGGAATTCGAAGTTGCCAAGGTCACTATATTGGAGGAGCTAAATCTGACCATGGATCAGTTTATTGACTTGTGTATTCTTTCTGGGTGTGATTATTGTGGAAGCATTCGAGGTGTTGGTGGTAAGACTGCTTTGAAGCTCATTCACCAGTATAGCTGTATAGAGAACATATTGAAGAACATCAATAAAGAGAGGTACCAGATACCTGATGATTGGCCATATCAGGAGGTTAGGCAGCTTTTTAAGGAACCAACTGTCTTAGCTGAAGAAAGGCAACTAGATCTTAAGTGGACTGCTCCCGATGAAGAAGGTTTAGTGACATTTCTGGTAAATGAGAACGGATTCAACAGAGAGAGGGTGACAAAGGCGATGGAAATAATTAAAGCTGCAAAGAACAAGTCGTCACAAGGCCAACCAGAATCTGTTTTTAAGCCAATGGCCAACTGCTCTACACCCATTAAACGGAAGGAAAAAAAAGGTAGTTGGGGAGGTATTACCACACAAGGCTCCGGGTTTAAAATTGTTATTTTGTTTTCTGTGGATGTTGATCTATCTGAGGATAAGCCAATGATTGTCATGAGGCACAGATGGTAA 1209 0.4376 MGVKGLTKLLADNAPKAVKVRSFQSYFGRKIAIDASMSIYQFLVVVGRSGTEMLTNEAGEVTSHLQGMFTRTVRLLEAGMEPVYVFDGKPPDLKQQELAKRYSKRAEAYEDLSEAIESGNREDIEKFSKRTVKVTKQHSEGCKRLLSLMGVPVIEAPSEAEAQCAALCKSGKVYAVASEDMDSLTFGAPRFLRHLMVPSSKKVPVMEFEVAKVTILEELNLTMDQFIDLCILSGCDYCGSIRGVGGKTALKLIHQYSCIENILKNINKERYQIPDDWPYQEVRQLFKEPTVLAEERQLDLKWTAPDEEGLVTFLVNENGFNRERVTKAMEIIKAAKNKSSQGQPESVFKPMANCSTPIKRKEKKGSWGGITTQGSGFKIVILFSVDVDLSEDKPMIVMRHRW 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2150g00054 402 SUPERFAMILY PIN domain-like 2 236 IPR029060 -
Pral2150g00054 402 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 362 IPR006084 -
Pral2150g00054 402 SMART xpgineu 147 221 IPR006086 GO:0004518
Pral2150g00054 402 SMART HhH_4 223 256 IPR008918 GO:0003677|GO:0003824
Pral2150g00054 402 Gene3D - 13 223 - -
Pral2150g00054 402 Hamap Flap endonuclease 1 [fen]. 1 349 IPR023426 GO:0016788
Pral2150g00054 402 FunFam Flap endonuclease 1 10 224 - -
Pral2150g00054 402 Pfam XPG I-region 150 236 IPR006086 GO:0004518
Pral2150g00054 402 CDD PIN_FEN1 4 334 - -
Pral2150g00054 402 Pfam XPG N-terminal domain 1 108 IPR006085 GO:0004518
Pral2150g00054 402 Gene3D - 224 288 - -
Pral2150g00054 402 FunFam Flap endonuclease 1 221 288 - -
Pral2150g00054 402 CDD H3TH_FEN1-Euk 224 292 - -
Pral2150g00054 402 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788
Pral2150g00054 402 SMART xpgn3 1 108 IPR006085 GO:0004518
Pral2150g00054 402 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 226 241 IPR006084 -
Pral2150g00054 402 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Pral2150g00054 402 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Pral2150g00054 402 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Pral2150g00054 402 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Pral2150g00054 402 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 221 355 IPR036279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2150g00054 Pral-Chr2150 232726 237579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2150g00054 1 364 Core DNA Replication Machinery Family AT5G26680 78.846 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2150g00054 K04799 - cave:132187694 621.698