Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2150g00052 ATGGGAAGGCACTCTTGCTGTTACAAGCAAAAGCTAAGGAAAGGCCTCTGGTCACCAGAGGAAGACGAGAAGCTTCTCAATTATATCACCAAGCATGGCCATGGATGTTGGAGCTCTGTCCCCAAGCTAGCTGGCCTGCAGAGATGTGGGAAGAGCTGCAGATTGAGGTGGATAAATTATCTGAGGCCTGATTTGAAGAGAGGAGCATTCTCCCAACAGGAAGAAAATTTGATTATTGAGCTCCATGCAGCACTAGGAAACAGGTGGTCTCAAATTGCAGCTCAGTTACCGGGAAGAACAGACAACGAGATAAAGAACCTATGGAATTCCTGCCTGAAAAAGAAGCTCAGGCAAAGAGGCATTGACCCCAACACCCACAAACCTCTCTCCGAGGTAGAGAACCACAAAGATAAGCCTTCCTCGGCCGACAGAACCAATCAGAAAACCTCCGTATTCAATGAACAGACTTTGGCTCATGAGTCAGCAAAACCAAAACCTCCACAACTATACCCTCCTCTTCAAGTTTCATCCCCTTCCAACTTCAACAATAGCAACAATAATTCCCATGATCTATTTCTTGATAGGTCTTGTTCCGATGTTGCGGGTTATTTCTCTTTCCAACCCTTCAACAACTATGCAACAAATCCCGACACCAGTACTTCTCTTTGCTTCATCCCCAGCTCTACCAGTTCCTCTCAGGCTATGTCGGGCCTTAATTCGGCTGTCAATCCCACTATTCCCCATTCAATATTGCCTACAAATGCAAATTCCACTCTTGTCCTCCAATCTGATAACAATCCCTCTGCTCATATTCATGGTGTTCAGGCATGGGAAGCCACTGCCTTTAATAACAATGGAGGCAAAAACAGTGGGAGCAATAGTGATATACCATTACAAAACAGCAATAACTTCATCGAGAACAACACTTTAACGTGGGAAAACGATTCCCATGTTAACGTGGCATCCTTGCAAGCAGAACAAGAAGACATAAAATGGTCTGAGTATCTTAATACCCCGTATTTTCTGGGCAATCAAATCTCTCAATCTATCTACAGTGAGGTTAAACCAGAAACGGGGTTCATAACAGATGAGGCGACTACTAGTTGGCACCATAATAGCCAGCAGCATCCACAAGTTTTTCAAGCTTCAGATGCATATACCAAGGATATGCAGAGATTTTCAGTGGCTTTTGGACAAACGCTTTAG 1206 0.4428 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENLIIELHAALGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENHKDKPSSADRTNQKTSVFNEQTLAHESAKPKPPQLYPPLQVSSPSNFNNSNNNSHDLFLDRSCSDVAGYFSFQPFNNYATNPDTSTSLCFIPSSTSSSQAMSGLNSAVNPTIPHSILPTNANSTLVLQSDNNPSAHIHGVQAWEATAFNNNGGKNSGSNSDIPLQNSNNFIENNTLTWENDSHVNVASLQAEQEDIKWSEYLNTPYFLGNQISQSIYSEVKPETGFITDEATTSWHHNSQQHPQVFQASDAYTKDMQRFSVAFGQTL 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2150g00052 401 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Pral2150g00052 401 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Pral2150g00052 401 Gene3D - 68 147 - -
Pral2150g00052 401 PANTHER MYB DOMAIN PROTEIN 55 1 313 - -
Pral2150g00052 401 MobiDBLite consensus disorder prediction 119 143 - -
Pral2150g00052 401 Gene3D - 11 67 - -
Pral2150g00052 401 SMART sant 66 114 IPR001005 -
Pral2150g00052 401 SMART sant 13 63 IPR001005 -
Pral2150g00052 401 FunFam Myb transcription factor 11 67 - -
Pral2150g00052 401 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pral2150g00052 401 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pral2150g00052 401 CDD SANT 17 61 IPR001005 -
Pral2150g00052 401 FunFam MYB transcription factor 68 140 - -
Pral2150g00052 401 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pral2150g00052 401 CDD SANT 69 109 IPR001005 -
Pral2150g00052 401 MobiDBLite consensus disorder prediction 119 182 - -
Pral2150g00052 401 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pral2150g00052 401 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2150g00052 Pral-Chr2150 218103 219959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2150g00052 1 401 MYB Transcription Factor Family AT1G09540 48.301 2.54e-109 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral2150g00052 Myb_DNA-binding 2.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2150g00052 K09422 - qsu:112017656 469.544