Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2150g00020 ATGCGAAGGTACACGAGAAGGATTTCCGAGGCTAAAATCAAGGCCCCTCAAATCGATCACGCTGATGCTCCAAAACAGGGCCCGTCTAGTGTTTCGGACACTTTTTATCACAAACTCAACCGAGTGTGGGAGTCCTTCGGGCTCGGTCTAATTATAGATGCCCGGGAAACTCTGCTGGACTTGTTCCTCTTTTACTCGGAGGTGACCAGAAGAGGAGGATATCATCAGGTCAGTAGAGAGAGGAAATGGGATGAACTTGTTTCTGCCTTAAAGTTGCAAGGCAGTAAGGCAAACTTACCCGTTCAACTTGAAAAGTGCTACGCTCTGCTTCTTTACCCGTTTGAGCAAATCTACCACTACAGGGATCCAGCACAGAAAGCTGTGACTAACCCCACCTTAGGTCTGCTCACAGATGTCATAAGCTCAGGGAGGAAGCGTGAATATGAGGTTAGTTTATCTGAATTAACGGAAAATGAAGATGGTGAGGTGGAGACGAAGATGTGCAAGGAAATGACAGGTAGCGAGCTCTCGGAACAGAAAATGCTGGTACTCGCATCCCCAGATGACAAGAAATTGAAGAAACGTCGAGGTGCTCCTCAGGGACATAAAACTGCATATCAGATATTCATCAAGCAGGAATGCGCTCGGTTGAGAAGTTGTAATGAGGCGTCTGCTCGCTCAAATATTCTGCACATGGCCATTGATGCATGGAAGAATTTGACTGAGATTGAGAGACAGCCGTTTGTGGAGAAGAGCAAAAAGGAAAACGAAAGGCTGATGGAAGCAATGAAAACTCGAGACCAGAATGTCAAGGCTGGCGTTGATTTTGGTGACTATGGTGTGACTAACTGCAGTGATGGCTTAGAGCTTACAATGGGCGAAGAAGAACCCAAAGAGCCATTAACTATTGACATGGGATATATCCCAAGTGAAGCATGA 939 0.4622 MRRYTRRISEAKIKAPQIDHADAPKQGPSSVSDTFYHKLNRVWESFGLGLIIDARETLLDLFLFYSEVTRRGGYHQVSRERKWDELVSALKLQGSKANLPVQLEKCYALLLYPFEQIYHYRDPAQKAVTNPTLGLLTDVISSGRKREYEVSLSELTENEDGEVETKMCKEMTGSELSEQKMLVLASPDDKKLKKRRGAPQGHKTAYQIFIKQECARLRSCNEASARSNILHMAIDAWKNLTEIERQPFVEKSKKENERLMEAMKTRDQNVKAGVDFGDYGVTNCSDGLELTMGEEEPKEPLTIDMGYIPSEA 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2150g00020 312 SMART bright_3 30 120 IPR001606 GO:0003677
Pral2150g00020 312 SMART ARID_2 26 115 - -
Pral2150g00020 312 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 199 267 IPR009071 -
Pral2150g00020 312 SUPERFAMILY HMG-box 182 264 IPR036910 -
Pral2150g00020 312 Gene3D - 13 131 IPR036431 GO:0003677
Pral2150g00020 312 SUPERFAMILY ARID-like 33 124 IPR036431 GO:0003677
Pral2150g00020 312 Gene3D High mobility group box domain 185 274 IPR036910 -
Pral2150g00020 312 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 31 271 - -
Pral2150g00020 312 CDD ARID 33 115 - -
Pral2150g00020 312 ProSiteProfiles ARID domain profile. 29 119 IPR001606 GO:0003677
Pral2150g00020 312 Pfam HMG (high mobility group) box 204 265 IPR009071 -
Pral2150g00020 312 Pfam ARID/BRIGHT DNA binding domain 33 115 IPR001606 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2150g00020 59 266 ARID Transcription Factor Family AT1G55650 27.727 7.79e-17 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pral2150g00020 ARID 4.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2150g00020 - - pcin:129307373 486.493