Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2150g00016 ATGGATTTCCAGGGATTCTTAAATGACTTGCAAGATTGGGAACTTTCTCGGAAAGACAAAACGCGAAAAATGAAGTCGCAAGCACTGCAAAAGGAAAAAGTTGCCGGTGGGGGGACTGCATCAAGAGGAGAAACTTTTTTTACAGAAAGTACTTCAGGGCATTATGATTTCTCAAGAAATAAAGATTCTTTTGATCATGTCCATAGTAGTTTCACCGCTGAAGATGTCCCCAATGCTGCTTCAGAAAAAGAACTGGGTAATGAGTACTTCAAGCAGAAGAAGTTTAAGGAAGCTATTGACTGCTATTCAAGAAGTATTGCCTTCTCACCGACAGCTGTGGCATATGCAAATAAAGCAATGGCCTTTATCAAAATCAGAAGATTTCAACAGGCTGAGGATGACTGTACAGAGGCCTTAAATCTAGATGATCGTTACATAAAAGCATACTCACGTCGAGCAACAGCCAGAAAAGAACTTGGGAAACTTAAAGAAGCAATGGAGGATGCTGAGTTTGCTCTGCGCCTGGAACCTGAAAATCAAGAAATCAAGAAACAGTATGCTGATATCAAATCTTTGTATGAGAATGAAATTCTTCAGAAAGCGTCTGGAGCTCTGGGAAGCTCTCTGCAGGTAACTCAAAAACTGGGAGAGTCAGCGACAAATACTTATAGGGGAACCGTCCATCCTGTTCCAAACGTTGCTGAAAAATCAGGGGCTGCTGACCTTCAAGATCACACGAAGGGACATAACAGAATTAACAAGCAAGAAATGAAGGCATCCGTTCAACATCTTGCTTCACATGTGGCTTCTCGAGTTATGGCTGAAGCTGCAAAAAATATAACACCGCCAAATTCAGCTTATCAGTTTGAGGTCTCGTGGAGAGGGTTTTCAGGTGATCCTGCCCTGCAGGCTCGTCTGTTAAAGGCCATATCTCCTCAAGATTTACCGAAGATATTCAAAAATGCCTTATCTTCTGCACTACTAATGGACATAATTAAGTGTGTGGCATCCTTTTTCACCAGTGAAGATACAGCTCTGGCTGTCAGTTACATTGAACACTTGACTAAGGTTTCAAGATTTGACATGCTCATTGTGTGTCTTACATCAACAGATAAGCATGTAGCAATTCCTTTCTTTCAACTTATCACGCTTCCAATGCAAACGTGA 1167 0.4147 MDFQGFLNDLQDWELSRKDKTRKMKSQALQKEKVAGGGTASRGETFFTESTSGHYDFSRNKDSFDHVHSSFTAEDVPNAASEKELGNEYFKQKKFKEAIDCYSRSIAFSPTAVAYANKAMAFIKIRRFQQAEDDCTEALNLDDRYIKAYSRRATARKELGKLKEAMEDAEFALRLEPENQEIKKQYADIKSLYENEILQKASGALGSSLQVTQKLGESATNTYRGTVHPVPNVAEKSGAADLQDHTKGHNRINKQEMKASVQHLASHVASRVMAEAAKNITPPNSAYQFEVSWRGFSGDPALQARLLKAISPQDLPKIFKNALSSALLMDIIKCVASFFTSEDTALAVSYIEHLTKVSRFDMLIVCLTSTDKHVAIPFFQLITLPMQT 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2150g00016 388 Pfam Tetratricopeptide repeat 83 111 IPR001440 GO:0005515
Pral2150g00016 388 Gene3D Tetratricopeptide repeat domain 67 177 IPR011990 GO:0005515
Pral2150g00016 388 Pfam Tetratricopeptide repeat 147 179 IPR019734 GO:0005515
Pral2150g00016 388 ProSiteProfiles TPR repeat profile. 79 112 IPR019734 GO:0005515
Pral2150g00016 388 ProSiteProfiles TPR repeat profile. 146 179 IPR019734 GO:0005515
Pral2150g00016 388 Coils Coil 152 172 - -
Pral2150g00016 388 SUPERFAMILY TPR-like 75 195 IPR011990 GO:0005515
Pral2150g00016 388 PANTHER OS05G0129900 PROTEIN 1 248 - -
Pral2150g00016 388 SMART tpr_5 113 145 IPR019734 GO:0005515
Pral2150g00016 388 SMART tpr_5 79 112 IPR019734 GO:0005515
Pral2150g00016 388 SMART tpr_5 146 179 IPR019734 GO:0005515
Pral2150g00016 388 Pfam Potential Monad-binding region of RPAP3 282 372 IPR025986 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2150g00016 Pral-Chr2150 61097 65694 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2150g00016 57 183 Calmodulin-binding Proteins AT3G25230 30.070 4.96e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2150g00016 K23002 - gmx:100784528 478.789