Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2150g00015 ATGGATTTCCAGGGATTCTTAAATGACTTGCAAGATTGGGAACTTTCTCGGAAAGACAAAACGCGAAAAATGAAGTCGCAAGCACTGCAAAAGGAAAAAGTTGCCGGTGGGGGGACTGCATCAAGAGGAGAAACTTTTTTTACAGAAAGTACTTCAGGGCATTATGATTTCTCAAGAAATAAAGATTCTTTTGATCATGTCCATAGTAGTTTCACCGCTGAAGATGTCCCCAATGCTGCTTCAGAAAAAGAACTGGGTAATGAGTACTTCAAGCAGAAGAAGTTTAAGGAAGCTATTGACTGCTATTCAAGAAGTATTGCCTTCTCACCGACAGCTGTGGCATATGCAAATAAAGCAATGGCCTTTATCAAAATCAGAAGATTTCAACAGGCTGAGGATGACTGTACAGAGGCCTTAAATCTAGATGATCGTTACATAAAAGCATACTCACGTCGAGCAACAGCCAGAAAAGAACTTGGGAAACTTAAAGAAGCAATGGAGGATGCTGAGTTTGCTCTGCGCCTGGAACCTGAAAATCAAGAAATCAAGAAACAGTATGCTGATATCAAATCTTTGTATGAGAATGAAATTCTTCAGAAAGCGTCTGGAGCTCTGGGAAGCTCTCTGCAGGTAACTCAAAAACTGGGAGAGTCAGCGACAAATACTTATAGGGGAACCGTCCATCCTGTTCCAAACGTTGCTGAAAAATCAGGGGCTGCTGACCTTCAAGATCACACGAAGGGACATAACAGAATTAACAAGCAAGAAATGAAGGCATCCGTTCAACATCTTGCTTCACATGTGGCTTCTCGAGTTATGGCTGAAGCTGCAAAAAATATAACACCGCCAAATTCAGCTTATCAGTTTGAGGTCTCGTGGAGAGGGTTTTCAGGTGATCCTGCCCTGCAGGCTCGTCTGTTAAAGGCCATATCTCCTCAAGATTTACCGAAGATATTCAAAAATGCCTTATCTTCTGCACTACTAATGGACATAATTAAGTGTGTGGCATCCTTTTTCACCAGTGAAGATACAGCTCTGGCTGTCAGTTACATTGAACACTTGACTAAGGTTTCAAGATTTGACATGCTCATTGTGTGTCTTACATCAACAGATAAGCATGATCTGCGCAAGATCTGGGAGGAAGTGTTCTGCAACGAGGCAACTCCAATGGAGTATGCAGAGATTCTTGATAACCTCCGATCCAAATACTGCATTGAACATTGA 1224 0.4191 MDFQGFLNDLQDWELSRKDKTRKMKSQALQKEKVAGGGTASRGETFFTESTSGHYDFSRNKDSFDHVHSSFTAEDVPNAASEKELGNEYFKQKKFKEAIDCYSRSIAFSPTAVAYANKAMAFIKIRRFQQAEDDCTEALNLDDRYIKAYSRRATARKELGKLKEAMEDAEFALRLEPENQEIKKQYADIKSLYENEILQKASGALGSSLQVTQKLGESATNTYRGTVHPVPNVAEKSGAADLQDHTKGHNRINKQEMKASVQHLASHVASRVMAEAAKNITPPNSAYQFEVSWRGFSGDPALQARLLKAISPQDLPKIFKNALSSALLMDIIKCVASFFTSEDTALAVSYIEHLTKVSRFDMLIVCLTSTDKHDLRKIWEEVFCNEATPMEYAEILDNLRSKYCIEH 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2150g00015 407 Pfam Potential Monad-binding region of RPAP3 282 372 IPR025986 -
Pral2150g00015 407 Pfam Tetratricopeptide repeat 83 111 IPR001440 GO:0005515
Pral2150g00015 407 PANTHER OS05G0129900 PROTEIN 1 248 - -
Pral2150g00015 407 ProSiteProfiles TPR repeat profile. 79 112 IPR019734 GO:0005515
Pral2150g00015 407 Pfam Tetratricopeptide repeat 147 179 IPR019734 GO:0005515
Pral2150g00015 407 SUPERFAMILY TPR-like 75 195 IPR011990 GO:0005515
Pral2150g00015 407 ProSiteProfiles TPR repeat profile. 146 179 IPR019734 GO:0005515
Pral2150g00015 407 Coils Coil 152 172 - -
Pral2150g00015 407 Gene3D Tetratricopeptide repeat domain 67 177 IPR011990 GO:0005515
Pral2150g00015 407 SMART tpr_5 113 145 IPR019734 GO:0005515
Pral2150g00015 407 SMART tpr_5 79 112 IPR019734 GO:0005515
Pral2150g00015 407 SMART tpr_5 146 179 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2150g00015 Pral-Chr2150 60784 65587 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2150g00015 57 183 Calmodulin-binding Proteins AT3G25230 30.070 1.00e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2150g00015 K23002 - gmx:100784528 530.02