Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2150g00012 ATGGATTTCCAGGGATTCTTAAATGACTTGCAAGATTGGGAACTTTCTCGGAAAGACAAAACGCGAAAAATGAAGTCGCAAGCACTGCAAAAGGAAAAAGTTGGGCATTATGATTTCTCAAGAAATAAAGATTCTTTTGATCATGTCCATAGTAGTTTCACCGCTGAAGATGTCCCCAATGCTGCTTCAGAAAAAGAACTGGGTAATGAGTACTTCAAGCAGAAGAAGTTTAAGGAAGCTATTGACTGCTATTCAAGAAGTATTGCCTTCTCACCGACAGCTGTGGCATATGCAAATAAAGCAATGGCCTTTATCAAAATCAGAAGATTTCAACAGGCTGAGGATGACTGTACAGAGGCCTTAAATCTAGATGATCGTTACATAAAAGCATACTCACGTCGAGCAACAGCCAGAAAAGAACTTGGGAAACTTAAAGAAGCAATGGAGGATGCTGAGTTTGCTCTGCGCCTGGAACCTGAAAATCAAGAAATCAAGAAACAGTATGCTGATATCAAATCTTTGTATGAGAATGAAATTCTTCAGAAAGCGTCTGGAGCTCTGGGAAGCTCTCTGCAGGTAACTCAAAAACTGGGAGAGTCAGCGACAAATACTTATAGGGGAACCGTCCATCCTGTTCCAAACGTTGCTGAAAAATCAGGGGCTGCTGACCTTCAAGATCACACGAAGGGACATAACAGAATTAACAAGCAAGAAATGAAGGCATCCGTTCAACATCTTGCTTCACATGTGGCTTCTCGAGTTATGGCTGAAGCTGCAAAAAATATAACACCGCCAAATTCAGCTTATCAGTTTGAGGTCTCGTGGAGAGGGTTTTCAGGTGATCCTGCCCTGCAGGCTCGTCTGTTAAAGGCCATATCTCCTCAAGATTTACCGAAGATATTCAAAAATGCCTTATCTTCTGCACTACTAATGGACATAATTAAGTGTGTGGCATCCTTTTTCACCAGTGAAGATACAGCTCTGGCTGTCAGTTACATTGAACACTTGACTAAGGTTTCAAGATTTGACATGCTCATTGTGTGTCTTACATCAACAGATAAGCATGATCTGCGCAAGATCTGGGAGGAAGTGTTCTGCAACGAGGCAACTCCAATGGAGTATGCAGAGATTCTTGATAACCTCCGATCCAAATACTGCATTGAACATTGA 1170 0.4171 MDFQGFLNDLQDWELSRKDKTRKMKSQALQKEKVGHYDFSRNKDSFDHVHSSFTAEDVPNAASEKELGNEYFKQKKFKEAIDCYSRSIAFSPTAVAYANKAMAFIKIRRFQQAEDDCTEALNLDDRYIKAYSRRATARKELGKLKEAMEDAEFALRLEPENQEIKKQYADIKSLYENEILQKASGALGSSLQVTQKLGESATNTYRGTVHPVPNVAEKSGAADLQDHTKGHNRINKQEMKASVQHLASHVASRVMAEAAKNITPPNSAYQFEVSWRGFSGDPALQARLLKAISPQDLPKIFKNALSSALLMDIIKCVASFFTSEDTALAVSYIEHLTKVSRFDMLIVCLTSTDKHDLRKIWEEVFCNEATPMEYAEILDNLRSKYCIEH 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2150g00012 389 Pfam Tetratricopeptide repeat 65 93 IPR001440 GO:0005515
Pral2150g00012 389 ProSiteProfiles TPR repeat profile. 128 161 IPR019734 GO:0005515
Pral2150g00012 389 PANTHER OS05G0129900 PROTEIN 1 230 - -
Pral2150g00012 389 Pfam Tetratricopeptide repeat 129 161 IPR019734 GO:0005515
Pral2150g00012 389 Pfam Potential Monad-binding region of RPAP3 264 354 IPR025986 -
Pral2150g00012 389 ProSiteProfiles TPR repeat profile. 61 94 IPR019734 GO:0005515
Pral2150g00012 389 SMART tpr_5 128 161 IPR019734 GO:0005515
Pral2150g00012 389 SMART tpr_5 95 127 IPR019734 GO:0005515
Pral2150g00012 389 SMART tpr_5 61 94 IPR019734 GO:0005515
Pral2150g00012 389 Gene3D Tetratricopeptide repeat domain 49 159 IPR011990 GO:0005515
Pral2150g00012 389 SUPERFAMILY TPR-like 57 177 IPR011990 GO:0005515
Pral2150g00012 389 Coils Coil 134 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2150g00012 Pral-Chr2150 60784 65694 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2150g00012 39 165 Calmodulin-binding Proteins AT3G25230 30.070 1.17e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2150g00012 K23002 - gmx:100784528 521.161