Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2150g00003 ATGGGAAGCGGGAAGAAACACGATCTGGAGCTTGAGAAAGTTCGTTTAGTGAGCTTGGCTCTTGATTTTGGCTTCGACGAAGACTCCGCCAAAAAATGCTTGGATCGCCTTGTCGCCCTATACGGTGATGACGGCCGGGATTTTATCACTGTGGAGTACTGCGGTGATGATTTTCTAGCAGCTTTAGCTGATTCAATGCAAGATACTGAGGAATGGGATGATTTACAGGCAATAGAATCAGAAGCTTGTGGAACTCTGACGAACCTGCTTGATAAAAATGTTGTCGGGTGTAAGTATGAAGATAATGGCATTTCAGGAGGTTGCATCAATATTACCGAGGATTCTCCGGAACCTCAGAAGAACCAGAAAGTGGTGGAGTTGGTTTCAAGTGACGAGGAGATGGACTTCAGTATTTCAAGGGAAAAATGTACACCTCCAGGGTCTTATTTGAATGGCAGAAGTAGCATCACTCAGGGCTCAATTTCTTCAACTGCCAGCAAAATAAGGTTGTCAGAACCTAAGGATGAAAGCCGTACTCTCACTTATGAAGAATTACGGGATCTGGATAACATTGAAATGGCAAATGTTGTTATATTCGGTAATAGGACATTTCGACCATTGCAGCATCAAGCTTGTAAAGTAGCTTTGGCAAAGCAAGATTGTTTTATTCTTATGCCTACGGGGGGTGGTAAATCTCTTTGCTATCAGCTTCCAGCCACTCTTCAATCAGGTGTTACAGTAGTTGTATCTCCCTTACTTTCACTCATTCAGGACCAGATAATCACATTGAACCTCAAGTTTGGAATACCAGCTACTTTTTTGAATTCTCAGCAAACTACTTCTCAAGCAGCAGCTGTCCTTCAGGAGCTAAGAAAAGTCAAACCATCATGCAAACTCTTGTATGTGACGCCTGAGAGAATTGCGGGCAATCAATCATTTCTTGAGGTTCTAACATGCATGCATAACAAGGGACAGCTAGCAGGTTTTGTTGTTGATGAGGCGCACTGTGTTAGCCAATGGGGACATGATTTCCGGCCTGATTATCGGGGACTAGGATGCCTTAAGCTGAACTTTCCGGATGTGCCTGTCATGGCGTTGACTGCCACTGCAACCCACTCTGTCCGCGAGGACATCTTAAGCGCTTTAAGAATCCCCCACGCAATTCTTCTTGAAAGAAGCTTTGATAGGCCAAACTTGAAGTATGAAGTAATTGTTAAGACAAAGGAGCCGCTAAAGCAGCTTGGGAAGCTAGTAACGGATCGCTTCAAGAATCAATGTGGAATTGTTTACTGCCTTTCAAAAAGCGAATGTGTTGAGGTCTCAAAATATTTGAACCAGAAATGTAATATTAAGACGGAGTATTACCATGCTGGCTTGTCTGCCCGCCAAAGAGTTTCTGTTCAAAAGAAATGGCACGAGGGAGAGGTCCATATTGTTTGTGCAACTATTGCTTTTGGAATGGGGATAGACAAGCCTGATGTTCGCTTCGTCATCCACAATACGTTGTCTAAATCAATTGAAAGCTATTATCAAGAATCAGGAAGGGCTGGAAGAGACAATCTACCTGCAGTTTGCATTGCTCTCTACCAGAAGAAGGATTTTAGTAGAGTCGTATGCTTGATAAGAAATGGCCAAGGTTATAAAAGGGAAAACCTTAAGTCGGCAATCGCTCAAGCCAAAAAGATGCAACAATATTGTGAACTAAAGGATGAATGCCGGAGGCAAGCTTTACTCAAACACTTTGGAGAATCTCTTGACAGAAAAGCCTGCAAATACGGATCTAACCCCTGTGATAACTGCCTCAAGAATGGTCTGTGA 1818 0.4312 MGSGKKHDLELEKVRLVSLALDFGFDEDSAKKCLDRLVALYGDDGRDFITVEYCGDDFLAALADSMQDTEEWDDLQAIESEACGTLTNLLDKNVVGCKYEDNGISGGCINITEDSPEPQKNQKVVELVSSDEEMDFSISREKCTPPGSYLNGRSSITQGSISSTASKIRLSEPKDESRTLTYEELRDLDNIEMANVVIFGNRTFRPLQHQACKVALAKQDCFILMPTGGGKSLCYQLPATLQSGVTVVVSPLLSLIQDQIITLNLKFGIPATFLNSQQTTSQAAAVLQELRKVKPSCKLLYVTPERIAGNQSFLEVLTCMHNKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGCLKLNFPDVPVMALTATATHSVREDILSALRIPHAILLERSFDRPNLKYEVIVKTKEPLKQLGKLVTDRFKNQCGIVYCLSKSECVEVSKYLNQKCNIKTEYYHAGLSARQRVSVQKKWHEGEVHIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPAVCIALYQKKDFSRVVCLIRNGQGYKRENLKSAIAQAKKMQQYCELKDECRRQALLKHFGESLDRKACKYGSNPCDNCLKNGL 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2150g00003 605 FunFam ATP-dependent DNA helicase 396 603 - -
Pral2150g00003 605 Pfam DEAD/DEAH box helicase 206 374 IPR011545 GO:0003676|GO:0005524
Pral2150g00003 605 Gene3D - 396 604 IPR027417 -
Pral2150g00003 605 Gene3D - 163 395 IPR027417 -
Pral2150g00003 605 NCBIfam RecQ family ATP-dependent DNA helicase 198 602 IPR004589 GO:0004386|GO:0006310
Pral2150g00003 605 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 212 388 IPR014001 -
Pral2150g00003 605 FunFam ATP-dependent DNA helicase 185 395 - -
Pral2150g00003 605 PANTHER DNA HELICASE RECQ FAMILY MEMBER 189 602 - -
Pral2150g00003 605 SMART ultradead3 200 404 IPR014001 -
Pral2150g00003 605 Pfam RecQ zinc-binding 532 601 IPR032284 -
Pral2150g00003 605 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 244 540 IPR027417 -
Pral2150g00003 605 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 410 568 IPR001650 -
Pral2150g00003 605 CDD DEXHc_RecQ 198 395 - -
Pral2150g00003 605 Pfam Helicase conserved C-terminal domain 413 519 IPR001650 -
Pral2150g00003 605 SMART helicmild6 438 520 IPR001650 -
Pral2150g00003 605 CDD SF2_C_RecQ 396 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2150g00003 Pral-Chr2150 8805 14454 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2150g00003 329 538 Eukaryotic Initiation Factors Gene Family AT5G11170 26.389 1.49e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2150g00003 K10899 - gmx:100806070 959.133