Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2143g00004 ATGGACCTCGATATATGCCGCTGGATACTAGAGTTTCTCCTCATGAGTCCCATTCCAGATTCAATCGTCAAGAATGTTTGGAATGCTTTGCCTGTCTCTGGTATCAGTTCGCGCCTGTGGAAAATATTGGCTCTCAGGGCTATTCAATCGGAGGTGGATACGGAATCTTTTACAGAAAACTCATTGGAATGTCTAGAGGTCATTGAAGAAATCGACAGGCTTGATGGCATTGCAATCGCAGAAGCAATGAAGGAGGCATATTGTGCGGTTGCCGTGGAGTGCAGTATCAGGTACCTTGAGTCATGCCCAGATAAGAACTCCCGCGGCTTGTTTGACGATGCTATTAATAGGATTTGGAGGGGCCGAGTTCGGAAAATGATTGAGGCGATGGCGCTGGGAAAGAGGAGTCACTTGTTTACGGCAGAGTTGATAGAGTGGAAGGACGTCATAGAGTCTGCACGTTGGGATGCAGAGGTGTGCGGGAGGTTAATGAACATGAATACCAGACAAAATGCACTCGATAAAGCTAGGGTTTATCTTAAAGAAACTTGGACATCCATGGGCCCTTCTTTCCTTGAGTTAGTAGCTAATTTGTCTAAAGACAAGGGCTTGGAAAATTCAAGGGGGGATAAGATGCGTGACGCAGAGCTTGCTGCTAGTATACCCAATGAAGGTTGTAACAAGGGTGTTTCTGAATCTGTCGTGGTCTCTGATCAGATGAATATGTGCGAAGGAAGGTTAAATTGTTCAACTAACACGACTGAGGAGGGTTTAGTTGTGTCTGGTGGAAATGGATTGGATAACGCTGCAATCTGCATGGAGAAGGCACCAGTGGCAGGTGAGAATCAAGATAGTGAGCAATTGGGGAATAGAGTTGTGTCTTCTGTTGGCGGAAATGAGGCATTGGGTGGGACTGACTTGCCTCAAAGGGCGGATGGAGCAATTCAAGAGGGCAACCTGCCACTTGAACATAACCGTGCTGCTCCCTCTACACGGAAAGTAGTTAAAATTATTGATGCTGAGAATGCAGGGCCAGCGACAGCTTGTAGCAAAGATCATAATGCATCTAATATTCAGGTTGAAAAACTTCGGAAATCTCTCATGTCAAGTTCTTCGGAGTTGCAAGCATTGGTGAAGGATCCTCTTCCTGATGCATTACATAAATCTGACATTGTGAGATCTGAATTAGCAACAAAGGGTGTGAATCATGAGCCTCCTTTTGAAAACCAGAGTACAGTTGTAAATGTACCAGAGCAAAATACTTGCAGGAGCTTGGTGCTTTATCAACCTATCAATGATATTTTAAAGAAATTGTCCTCTGCTAATCGCAGTAATGTTCGACGTCCCAGCTGGATGGAACGAAATAGTACTGCCCATACTTATGAGTGGGATGATCCATTTAATGACTTGCCTGAGGGAAGCTCTAAGAAAAGGAAGAGAAAAGTAAGATGGAGTTCCGAAGAAGAGGATGCATTAAGGGCTGGTGTAAAGAAGTTTGGCAAAGGAAACTGGAAGCCAATCCTAAGGTTTTACAGTGAGATATTTACAAAGACGGGAAGAACAGAAGTTGATTTGAAGGATAAATGGAGAAATTTGACACGGTGGTCATAG 1611 0.4426 MDLDICRWILEFLLMSPIPDSIVKNVWNALPVSGISSRLWKILALRAIQSEVDTESFTENSLECLEVIEEIDRLDGIAIAEAMKEAYCAVAVECSIRYLESCPDKNSRGLFDDAINRIWRGRVRKMIEAMALGKRSHLFTAELIEWKDVIESARWDAEVCGRLMNMNTRQNALDKARVYLKETWTSMGPSFLELVANLSKDKGLENSRGDKMRDAELAASIPNEGCNKGVSESVVVSDQMNMCEGRLNCSTNTTEEGLVVSGGNGLDNAAICMEKAPVAGENQDSEQLGNRVVSSVGGNEALGGTDLPQRADGAIQEGNLPLEHNRAAPSTRKVVKIIDAENAGPATACSKDHNASNIQVEKLRKSLMSSSSELQALVKDPLPDALHKSDIVRSELATKGVNHEPPFENQSTVVNVPEQNTCRSLVLYQPINDILKKLSSANRSNVRRPSWMERNSTAHTYEWDDPFNDLPEGSSKKRKRKVRWSSEEEDALRAGVKKFGKGNWKPILRFYSEIFTKTGRTEVDLKDKWRNLTRWS 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2143g00004 536 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 476 536 IPR017930 -
Pral2143g00004 536 MobiDBLite consensus disorder prediction 465 481 - -
Pral2143g00004 536 Gene3D - 473 535 - -
Pral2143g00004 536 CDD SANT_TRF 482 534 - -
Pral2143g00004 536 PANTHER MYB TRANSCRIPTION FACTOR 1 534 - -
Pral2143g00004 536 SMART sant 480 535 IPR001005 -
Pral2143g00004 536 Pfam Myb-like DNA-binding domain 481 532 IPR001005 -
Pral2143g00004 536 ProSiteProfiles Myb-like domain profile. 476 533 IPR001005 -
Pral2143g00004 536 SUPERFAMILY Homeodomain-like 478 534 IPR009057 -
Pral2143g00004 536 MobiDBLite consensus disorder prediction 462 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2143g00004 Pral-Chr2143 39445 42933 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2143g00004 484 532 Single Myb Histone (SMH) Gene Family AT1G15720 59.184 3.60e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pral2143g00004 Myb_DNA-binding 5.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2143g00004 - - pcin:129285243 767.689