Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral2143g00002 | ATGTCTGCTGCTTCCTCGTCTTCACCGTTCTTCGGAATCACAGAAGAAAACCCAATTCAGATGACACAACAGCAGCACCAACATCATCAATCCTCCACGGCTGCTTCCTCGACTGCTCCAAACACAGCAGTGCCTCAGAAGAAAAGAAGGAATCAACCTGGAACACCAAATCCAGATGCGGAGGTGATAGCTCTATCTCCCAAGACATTAATGGCGACAAACAGGTTCATATGTGAGGTATGCAACAAAGGGTTCCAAAGAGAGCAGAACCTACAACTCCACAGAAGAGGACACAACCTACCATGGAAGCTGAAGCAGAAGACTAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCAGAGCCCACATGCGTCCACCATGACCCTTCAAGAGCCCTGGGTGACCTCACTGGCATTAAGAAGCACTATTCTCGCAAACATGGCGAGAAGAAATGGAAGTGCGAGAAGTGTTCCAAGAAATACGCTGTTCAATCTGATTGGAAAGCACATTCCAAGACTTGTGGTACCAGAGAATACAGATGCGACTGTGGCACTCTCTTCTCCAGACGTGACAGTTTTATCACTCACAGAGCCTTCTGTGATGCCCTAGCTCAGGAGAGTGCGAGGAACCCTGCAAGCTTAAACCCTATAGGCACTCATCTTTATGGGACAAACCACCACATGAGCTTAGGCCTATCTCATCATCAGCAAGTTGCTGGTTCCTCAATGTCCCATCATCATCTTCATCATCAAAACCTCCACGCTGCTGCTGCTTCTGCAACAAACCCTAATAATACCGGTATCTTGCGTCTAGGCAATGCCAATGCAGCAAAATTTGAGCCCACCGGCTTAATCTCACCCTCCTCATCAAACCCATCAATGCCCAATAATTCCTCAGCTTTTTTCACCACAGATCCGATCCCTAACCAAGGATTTCAGCAGCAAGCAGCATTCTCGTCTTCCGGCAAGGCTTCCTCTATACATGGCCTCATGCAGCTTCCTGATCTTCAAGGAAACCCTAGTAATAACAACAGTTCGTCGAATCCTTTTAATCTAGGGTTCTTCCCTAATAACAGTATGATCACTGGTCAGTTCAATAACCCTATTGGTGATCATCATCACCATGTCGGGTCAGCTGGTTTAGCTTCCTCAGTGCTCTTTAGCAACTCAATCCAACACGACGACGTTTCTCCAGCGGCGGCTCATATGTCTGCGACTGCATTGCTTCAGAAAGCTGCTCAAATGGGCTCGACCACAACAACGTCAAATAATAGTTCTTCCTCGTTACTTCGAGGAATGGGTGGTTCAACAACCAATAATAATAATGGTGCTAAATCGGATAATCTTGTCACTTTTGGAAGTGACGGTACAGCAGAAAACGACCACCACCACCACCACCACCATCTTCGAGGGTTGATGAACTCTCTTGCTAATGGGAATCCTTCCATATTCGGAAATGTGCAAGCAGGGAACGATCAGGCTAATAGTCTGCAACAGAATCTGGGTGTGAGCTTTGGAGGTTCTGATAAATTAACGTTAGACTTTTTAGGTGTCGGAGGAATGGTGAGAAACATGAATGGTGGGTTTTCACAGAGAGAACCTCAACAACATGGAAGCATGAACATGAGTTCTTTGGAACCAGCAGCTGGACAGGCAAGCCAAAGTTTCAGAAGCACGACGCTGCAATGA | 1689 | 0.466 | MSAASSSSPFFGITEENPIQMTQQQHQHHQSSTAASSTAPNTAVPQKKRRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARNPASLNPIGTHLYGTNHHMSLGLSHHQQVAGSSMSHHHLHHQNLHAAAASATNPNNTGILRLGNANAAKFEPTGLISPSSSNPSMPNNSSAFFTTDPIPNQGFQQQAAFSSSGKASSIHGLMQLPDLQGNPSNNNSSSNPFNLGFFPNNSMITGQFNNPIGDHHHHVGSAGLASSVLFSNSIQHDDVSPAAAHMSATALLQKAAQMGSTTTTSNNSSSSLLRGMGGSTTNNNNGAKSDNLVTFGSDGTAENDHHHHHHHLRGLMNSLANGNPSIFGNVQAGNDQANSLQQNLGVSFGGSDKLTLDFLGVGGMVRNMNGGFSQREPQQHGSMNMSSLEPAAGQASQSFRSTTLQ | 562 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral2143g00002 | 562 | MobiDBLite | consensus disorder prediction | 416 | 455 | - | - | |
Pral2143g00002 | 562 | MobiDBLite | consensus disorder prediction | 331 | 350 | - | - | |
Pral2143g00002 | 562 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 78 | 98 | IPR013087 | - | |
Pral2143g00002 | 562 | Gene3D | Classic Zinc Finger | 55 | 124 | - | - | |
Pral2143g00002 | 562 | MobiDBLite | consensus disorder prediction | 416 | 474 | - | - | |
Pral2143g00002 | 562 | MobiDBLite | consensus disorder prediction | 1 | 61 | - | - | |
Pral2143g00002 | 562 | SUPERFAMILY | beta-beta-alpha zinc fingers | 75 | 172 | IPR036236 | - | |
Pral2143g00002 | 562 | SMART | c2h2final6 | 117 | 147 | IPR013087 | - | |
Pral2143g00002 | 562 | SMART | c2h2final6 | 76 | 98 | IPR013087 | - | |
Pral2143g00002 | 562 | SMART | c2h2final6 | 152 | 172 | IPR013087 | - | |
Pral2143g00002 | 562 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 130 | 209 | - | - | |
Pral2143g00002 | 562 | MobiDBLite | consensus disorder prediction | 1 | 53 | - | - | |
Pral2143g00002 | 562 | MobiDBLite | consensus disorder prediction | 529 | 562 | - | - | |
Pral2143g00002 | 562 | MobiDBLite | consensus disorder prediction | 335 | 350 | - | - | |
Pral2143g00002 | 562 | FunFam | protein indeterminate-domain 12-like | 55 | 123 | - | - | |
Pral2143g00002 | 562 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 22 | 535 | IPR031140 | - | |
Pral2143g00002 | 562 | Pfam | Zinc-finger double-stranded RNA-binding | 76 | 98 | IPR022755 | - | |
Pral2143g00002 | 562 | Gene3D | Classic Zinc Finger | 130 | 209 | - | - | |
Pral2143g00002 | 562 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 76 | 98 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral2143g00002 | Pral-Chr2143 | 11418 | 16345 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral2143g00002 | 71 | 526 | C2H2 Transcription Factor Family | AT2G02080 | 49.471 | 9.22e-124 | 369 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Pral2143g00002 | zf-C2H2_jaz | 3.4e-05 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral2143g00002 | K25870 | - | tcc:18609936 | 563.148 |