Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2143g00002 ATGTCTGCTGCTTCCTCGTCTTCACCGTTCTTCGGAATCACAGAAGAAAACCCAATTCAGATGACACAACAGCAGCACCAACATCATCAATCCTCCACGGCTGCTTCCTCGACTGCTCCAAACACAGCAGTGCCTCAGAAGAAAAGAAGGAATCAACCTGGAACACCAAATCCAGATGCGGAGGTGATAGCTCTATCTCCCAAGACATTAATGGCGACAAACAGGTTCATATGTGAGGTATGCAACAAAGGGTTCCAAAGAGAGCAGAACCTACAACTCCACAGAAGAGGACACAACCTACCATGGAAGCTGAAGCAGAAGACTAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCAGAGCCCACATGCGTCCACCATGACCCTTCAAGAGCCCTGGGTGACCTCACTGGCATTAAGAAGCACTATTCTCGCAAACATGGCGAGAAGAAATGGAAGTGCGAGAAGTGTTCCAAGAAATACGCTGTTCAATCTGATTGGAAAGCACATTCCAAGACTTGTGGTACCAGAGAATACAGATGCGACTGTGGCACTCTCTTCTCCAGACGTGACAGTTTTATCACTCACAGAGCCTTCTGTGATGCCCTAGCTCAGGAGAGTGCGAGGAACCCTGCAAGCTTAAACCCTATAGGCACTCATCTTTATGGGACAAACCACCACATGAGCTTAGGCCTATCTCATCATCAGCAAGTTGCTGGTTCCTCAATGTCCCATCATCATCTTCATCATCAAAACCTCCACGCTGCTGCTGCTTCTGCAACAAACCCTAATAATACCGGTATCTTGCGTCTAGGCAATGCCAATGCAGCAAAATTTGAGCCCACCGGCTTAATCTCACCCTCCTCATCAAACCCATCAATGCCCAATAATTCCTCAGCTTTTTTCACCACAGATCCGATCCCTAACCAAGGATTTCAGCAGCAAGCAGCATTCTCGTCTTCCGGCAAGGCTTCCTCTATACATGGCCTCATGCAGCTTCCTGATCTTCAAGGAAACCCTAGTAATAACAACAGTTCGTCGAATCCTTTTAATCTAGGGTTCTTCCCTAATAACAGTATGATCACTGGTCAGTTCAATAACCCTATTGGTGATCATCATCACCATGTCGGGTCAGCTGGTTTAGCTTCCTCAGTGCTCTTTAGCAACTCAATCCAACACGACGACGTTTCTCCAGCGGCGGCTCATATGTCTGCGACTGCATTGCTTCAGAAAGCTGCTCAAATGGGCTCGACCACAACAACGTCAAATAATAGTTCTTCCTCGTTACTTCGAGGAATGGGTGGTTCAACAACCAATAATAATAATGGTGCTAAATCGGATAATCTTGTCACTTTTGGAAGTGACGGTACAGCAGAAAACGACCACCACCACCACCACCACCATCTTCGAGGGTTGATGAACTCTCTTGCTAATGGGAATCCTTCCATATTCGGAAATGTGCAAGCAGGGAACGATCAGGCTAATAGTCTGCAACAGAATCTGGGTGTGAGCTTTGGAGGTTCTGATAAATTAACGTTAGACTTTTTAGGTGTCGGAGGAATGGTGAGAAACATGAATGGTGGGTTTTCACAGAGAGAACCTCAACAACATGGAAGCATGAACATGAGTTCTTTGGAACCAGCAGCTGGACAGGCAAGCCAAAGTTTCAGAAGCACGACGCTGCAATGA 1689 0.466 MSAASSSSPFFGITEENPIQMTQQQHQHHQSSTAASSTAPNTAVPQKKRRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARNPASLNPIGTHLYGTNHHMSLGLSHHQQVAGSSMSHHHLHHQNLHAAAASATNPNNTGILRLGNANAAKFEPTGLISPSSSNPSMPNNSSAFFTTDPIPNQGFQQQAAFSSSGKASSIHGLMQLPDLQGNPSNNNSSSNPFNLGFFPNNSMITGQFNNPIGDHHHHVGSAGLASSVLFSNSIQHDDVSPAAAHMSATALLQKAAQMGSTTTTSNNSSSSLLRGMGGSTTNNNNGAKSDNLVTFGSDGTAENDHHHHHHHLRGLMNSLANGNPSIFGNVQAGNDQANSLQQNLGVSFGGSDKLTLDFLGVGGMVRNMNGGFSQREPQQHGSMNMSSLEPAAGQASQSFRSTTLQ 562
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pral2143g00002 562 MobiDBLite consensus disorder prediction 416 455 - -
Pral2143g00002 562 MobiDBLite consensus disorder prediction 331 350 - -
Pral2143g00002 562 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Pral2143g00002 562 Gene3D Classic Zinc Finger 55 124 - -
Pral2143g00002 562 MobiDBLite consensus disorder prediction 416 474 - -
Pral2143g00002 562 MobiDBLite consensus disorder prediction 1 61 - -
Pral2143g00002 562 SUPERFAMILY beta-beta-alpha zinc fingers 75 172 IPR036236 -
Pral2143g00002 562 SMART c2h2final6 117 147 IPR013087 -
Pral2143g00002 562 SMART c2h2final6 76 98 IPR013087 -
Pral2143g00002 562 SMART c2h2final6 152 172 IPR013087 -
Pral2143g00002 562 FunFam protein indeterminate-domain 5, chloroplastic-like 130 209 - -
Pral2143g00002 562 MobiDBLite consensus disorder prediction 1 53 - -
Pral2143g00002 562 MobiDBLite consensus disorder prediction 529 562 - -
Pral2143g00002 562 MobiDBLite consensus disorder prediction 335 350 - -
Pral2143g00002 562 FunFam protein indeterminate-domain 12-like 55 123 - -
Pral2143g00002 562 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 535 IPR031140 -
Pral2143g00002 562 Pfam Zinc-finger double-stranded RNA-binding 76 98 IPR022755 -
Pral2143g00002 562 Gene3D Classic Zinc Finger 130 209 - -
Pral2143g00002 562 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 98 IPR013087 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pral2143g00002 Pral-Chr2143 11418 16345 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2143g00002 71 526 C2H2 Transcription Factor Family AT2G02080 49.471 9.22e-124 369
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral2143g00002 zf-C2H2_jaz 3.4e-05 CL0361
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2143g00002 K25870 - tcc:18609936 563.148