Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2139g00008 ATGGAGCTTGAAGGAGATGAACCTCTCAGTTTTGGAAAGAAAATTGGTAGTCTGGATGTAGATTCTAGTTATTTTGGAGGTTTTAAAGGCAAGCTTCCTTTTGGTGAACAACCTTCTAGAACACTTTTTGTTAGAAACATCAATAGCAATGTTGAAGATTCTGAGCTAAAGGCTCTTTTTGAGCAATATGGAGACATCCGCACCATTTATACGTCCTGCAAACATCGTGGCTTTGTGATGATTTCTTACTATGCTAGGGCAGCACAAAATGCAATGCAAGCACTCCAGAATAGGTCGTTGAGATCTAGGAAACTTGACATTCATTATTCAATTCCAAAGGGCAATGCTCCTGAGAAGGATATAAGCCATGGCACGCTAGTGCTATCTGGTCTTGATTCTTCTGTTTCAAATGACGAGCTTCAACATATTTTTGGATTTTATGGAGAAATAAAAGAAATCTATGAATCTCCAGAAGTAAATTATAGAAAAATTATTGAATTTTATGATGTGCGAGCTGCAGAAGCCGCTCTCCGTGCATTAAACAGAAGTGACATTGCTGGTAAGCAGATCAAGCTTGAACCTGGCCATCCTCGGGGAACAACATGTCTGACGCAGGAGTCTCACAATGGCCAAGATGAACCTGATTTTGGTCAAAGTCTTTGTGACAACTTGTCACTAAGACAGAGAGCAACAATGTCTTCTGGAGTAATTGCATCTGGCTGCTTAGACAATGGATCTAATCCAGGATTTCGCCCTGCAATGCAGCAACCTATCACTCCGTTAATTGATAATGCTTTCTCTCCTGTGAATTCTAGCATCCACAAATCAGTGAGAGGGCCAACTTCTGGAAAAGTGCCCAGTGTTTGCGAGTCCAGTAACTTCCTTGATGCAATGAAATTTGCCTCTCTTCCAAGATTCCACCCTCATTCCCTCCCTGATTATCATGAAAGTTTTGCTAATGGTAGTGCTTACAATTTTTCAAGCATTGTTGGCAATGTGGCTGGCAATATCGGGACTGCAGTGACAGACAACTCAGATAGCAGGCACAATAAGGGAATAGGTTCACCTGGGAATCTGATGGAATTTACTGGAGCAGGAAATGGGAACCATCAACGTCATGGACTTTATCATGTGTGGAACAACTCCAATTTGCATCAGGAACCTTCACCAAATCCCATGCTTTGGCAGAAAACACCATCATTTGTTAATGGTGCTTGTGCTTCTGGCCTTCCACAAATGCCTGGCTTTCCGAGAACACAGCCTCACATGCTGAGAGCATCACATATGGACCATCATGTTGGGTCAGCTCCTGTTAATGCCTCACCCTGGGACAGGCAGCACTCTTATTTGGGAGTGTCTCCTGAAACTTCTGGTTTTCGTATGGGTTCTCTAGGAAGTGCTGGTGTACCTGGTAGCTGGCAATTGCATCCCCCAGATTTTTCTTCTCACAACATGTTCCCTCATATTGGTGGGAATGGTGCAGAATTGACGCCAACTGCTGGGCAAAACTCTCCTAATCAGTTGTCACATCTTTTCCCTGGGAGACATCCCATGAATTCTATGTCCAAACTTGATTCCAGTGAACGAATGAGGAGTCTGTATCCCCTCCGGAAAAGTGAAGCTAACGCTAATAATGCTGATAAAAAGCAATATGAACTTGACCTAGGCTGCATAATGCGTGGGGAAGACAGTCGAACAACTCTCAATAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTAGCTGCTATAGATGAGCAATGTCGGGGAACTTATGATTTTCTATATTTGCCAATTGACTTTAAGAACAAATGTAATGTTGGCTACGCATTTATTAATATGATTGATCCTGCTCAGATTATTCCATTCCACCAGGCATTTAATGGGAAAAAATGGGAGAAATTTAATAGTGAAAAGGTAGCCTCACTTGCATATGCCCGAATTCAGGGCAAAGCTGCACTTATTGCTCACTTCCAGAATTCAAGCCTGATGAATGAAGACAAGCGTTGCCGTCCTATTCTGTTCCACACGGATGGCCCAAATGCTGGTGATCCGGAACCCTTCCCCATGGGTACTAGTATTAGAATGAGGCCCGGAAAATCTCGCGGCAGTAGCAATAATGAGGAGAATCGCAGCCAGGGGAGTCCTTCAACTTTGGCAGGTGGAGAGGGACCTACTACTAATGGAATAGATTCTTCATTGAGCTCTTCAAAGAATTCTGACTGA 2229 0.4293 MELEGDEPLSFGKKIGSLDVDSSYFGGFKGKLPFGEQPSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTSCKHRGFVMISYYDXRAAQNAMQALQNRSLRSRKLDIHYSIPKGNAPEKDISHGTLVLSGLDSSVSNDELQHIFGFYGEIKEIYESPEVNYRKIIEFYDVRAAEAALRALNRSDIAGKQIKLEPGHPRGTTCLTQESHNGQDEPDFGQSLCDNLSLRQRATMSSGVIASGCLDNGSNPGFRPAMQQPITPLIDNAFSPVNSSIHKSVRGPTSGKVPSVCESSNFLDAMKFASLPRFHPHSLPDYHESFANGSAYNFSSIVGNVAGNIGTAVTDNSDSRHNKGIGSPGNLMEFTGAGNGNHQRHGLYHVWNNSNLHQEPSPNPMLWQKTPSFVNGACASGLPQMPGFPRTQPHMLRASHMDHHVGSAPVNASPWDRQHSYLGVSPETSGFRMGSLGSAGVPGSWQLHPPDFSSHNMFPHIGGNGAELTPTAGQNSPNQLSHLFPGRHPMNSMSKLDSSERMRSLYPLRKSEANANNADKKQYELDLGCIMRGEDSRTTLMXKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPAQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGTSIRMRPGKSRGSSNNEENRSQGSPSTLAGGEGPTTNGIDSSLSSSKNSD 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2139g00008 744 SMART rrm1_1 41 109 IPR000504 GO:0003723
Pral2139g00008 744 SMART rrm1_1 126 194 IPR000504 GO:0003723
Pral2139g00008 744 Gene3D - 124 217 IPR012677 -
Pral2139g00008 744 Gene3D - 34 123 IPR012677 -
Pral2139g00008 744 PANTHER RNA RECOGNITION MOTIF-CONTAINING 30 714 - -
Pral2139g00008 744 MobiDBLite consensus disorder prediction 701 744 - -
Pral2139g00008 744 CDD RRM3_MEI2_like 569 654 IPR034454 -
Pral2139g00008 744 FunFam Protein MEI2-like 1 124 218 - -
Pral2139g00008 744 SUPERFAMILY RNA-binding domain, RBD 37 199 IPR035979 GO:0003676
Pral2139g00008 744 CDD RRM1_MEI2_like 39 114 IPR034453 -
Pral2139g00008 744 MobiDBLite consensus disorder prediction 342 367 - -
Pral2139g00008 744 MobiDBLite consensus disorder prediction 201 217 - -
Pral2139g00008 744 Pfam RNA recognition motif 2 566 662 IPR007201 -
Pral2139g00008 744 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 113 IPR000504 GO:0003723
Pral2139g00008 744 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 192 IPR000504 GO:0003723
Pral2139g00008 744 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 106 IPR000504 GO:0003723
Pral2139g00008 744 MobiDBLite consensus disorder prediction 471 523 - -
Pral2139g00008 744 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 198 IPR000504 GO:0003723
Pral2139g00008 744 MobiDBLite consensus disorder prediction 197 217 - -
Pral2139g00008 744 SUPERFAMILY RNA-binding domain, RBD 569 653 IPR035979 GO:0003676
Pral2139g00008 744 MobiDBLite consensus disorder prediction 497 511 - -
Pral2139g00008 744 FunFam MEI2-like protein 5 isoform 2 29 123 - -
Pral2139g00008 744 MobiDBLite consensus disorder prediction 676 744 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2139g00008 Pral-Chr2139 29446 34554 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2139g00008 35 191 Eukaryotic Initiation Factors Gene Family AT3G16380 25.843 4.53e-08 54.7