Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2125g00001 ATGGTGAAGTCATCGTCGTGCTGTGAGAAACTAGGAGGGTTAAAGAAAGGACCATGGACTCCTGAAGAAGACCAGAAGCTGGTGGCTTATATTCATCAACGTGGCCAAGGAAGCTGGTCTTCCTTGCCAGCAAAAGCTGGGCTTCGGAGATGTGGGAAGAGCTGCAGATTGAGGTGGACTAATTACTTAAGACCTGATATAAAACGAGGCAAGTTCAGTTTGAAGGAAGATCAAATCATTATTCAACTTCACGCTCTTCTTGGAAACAGATGGTCGGTGATAGCTCATCATTTGCCAAAGAGAACAGACAACGAGATCAAGAACCACTGGAACACCCGCCTTAAGAAGAGGCTCACCAGAATGGGTATCGACCCCAACACCCACAAGCCCATCAACGAAGCCGCCAACCTCTGCCATATGGCTCAGTGGGAGATTGCTCGGCTCCAAGCCGAAGCCAGACAAGTCAAAGAACATTCCAAACTTCAGCTCCAGAACCAGCTCGGCTCCTCCTCCTCTTCCCACCAGCCTTCAGTGACTCGGCTCGTCCTCAACAAGGTCACACCTCGCCCATCGCCACCTCCCTGCCTCGACGTGCTCAAGGCATGGCAGAATTCATGGTCGTCCGCCACGTCGAAGCCCTCAACAGAGAACACCCCCAAAACGCATAGCATGTACGCTATGATGCTCGCCACCGACGACTTCGAGTCACCGTCGTCCATGTTGAGCTTCCCGGACACCGCCCCTCTCAATAACTCCGAATGTACCAACAGTAATACTACCTTTGGGCTGATCAATCAAATTTTACTTCCTTCCTTCTCCACCACCATCGTCGCAAATGATGGTGGAACCATGACTGGGCAAAGCGACAGTGAAGCATGGGGAAACAAGGTGCGATGCTTGGGAGACGACTGCAATATTACGGCGGCAGTGGAAGCATTCAGATCAACAGGGTATAACTGTAATTCCATGGAAGGTCTCCTTAATGACGACTTCTTGGTGTGTGGACATAATGAGATGTCTCCATCGCCGCAACAAAACTTGGGACCGTCGGGTGTTGGAGATGACTGGGAAGCCATTGTTGACCTGATCAAAGGTTCGCACCCATCACCTGCTTTCCCAGTGTTGTGA 1128 0.5089 MVKSSSCCEKLGGLKKGPWTPEEDQKLVAYIHQRGQGSWSSLPAKAGLRRCGKSCRLRWTNYLRPDIKRGKFSLKEDQIIIQLHALLGNRWSVIAHHLPKRTDNEIKNHWNTRLKKRLTRMGIDPNTHKPINEAANLCHMAQWEIARLQAEARQVKEHSKLQLQNQLGSSSSSHQPSVTRLVLNKVTPRPSPPPCLDVLKAWQNSWSSATSKPSTENTPKTHSMYAMMLATDDFESPSSMLSFPDTAPLNNSECTNSNTTFGLINQILLPSFSTTIVANDGGTMTGQSDSEAWGNKVRCLGDDCNITAAVEAFRSTGYNCNSMEGLLNDDFLVCGHNEMSPSPQQNLGPSGVGDDWEAIVDLIKGSHPSPAFPVL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2125g00001 375 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Pral2125g00001 375 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 218 - -
Pral2125g00001 375 Gene3D - 13 69 - -
Pral2125g00001 375 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 63 IPR017930 -
Pral2125g00001 375 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Pral2125g00001 375 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Pral2125g00001 375 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Pral2125g00001 375 Coils Coil 131 151 - -
Pral2125g00001 375 CDD SANT 71 114 IPR001005 -
Pral2125g00001 375 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Pral2125g00001 375 FunFam MYB transcription factor 70 131 - -
Pral2125g00001 375 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Pral2125g00001 375 Gene3D - 70 137 - -
Pral2125g00001 375 CDD SANT 18 63 IPR001005 -
Pral2125g00001 375 SMART sant 68 116 IPR001005 -
Pral2125g00001 375 SMART sant 15 65 IPR001005 -
Pral2125g00001 375 FunFam MYB-related transcription factor 15 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2125g00001 Pral-Chr2125 20288 22050 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2125g00001 5 175 MYB Transcription Factor Family AT5G15310 70.492 5.25e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral2125g00001 Myb_DNA-binding 4.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2125g00001 K09422 - gmx:100792994 346.28