Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2122g00008 ATGTCACTCCGACGAAGGACTCTCGCGCTGAAACCGGCATCCAAGTCCCCTTCAATCGGTAAATCGTTCGATTGCGATGACGTGTGCTGCGAAGAATGTGGATCCGGCCACTCGCCGGCCAAGTTGATTCTTTGCGACAAATGTGATCGAGGATACCACCTCTTCTGCCTCAGACCCATACTTGTTGCTGTGCCCAATGGATCTTGGTTCTGCCACTCTTGCTCTAAAAACAAGAAGCCCAAGTCTTTTCCTCTTATTCAGACTAAAATTATTGACTTCTTTCGCATTCAACGGTCGCCGCAAGCTCCTCAAATATCCAGTCAAGATATCCGAAAGAAACGAAAGCGGGCTACAAGCCTGGTGGTGTCGAAAAAGAAACGAAAGCTGCTGCCTTTCTGCCCAAGTGAGGATCCCTCAAGGAGATTAGAACAGATGGCATCTCTGGCAACGGCATTGACAGCAACTAACGCAGAATTCAGCAACGAGCTTACTTACATGCCAGGAATGGCGCCGAGATCAGCAAATCGCCCGTCTCTCGAAAACGGTGGAATGCAGGTTTTGTCCAAAGAAGATGCAGACACCTTGAACTTGTGCAGGAGTATGATGGAAAGAGGAGAATGTCCACCCCTCATGGTTGTTTTTGATCCTCAAGAAGGGTTCACTGTTGAGGCAGACAAATGGATAAGAGACTTGACGATAATCACAGAGTATGTTGGAGATGTTGACTATTTGAGGAATCGTGAGAATGATGACGGGGATAGCATGATGACACTTCTTTCCGCTTCTGATGCTTCACAAACGTTAGTAGTCTGTCCGGACAAACGAAGTAACATCGCGCGGTTTATTAACGGCATTAATAATCACACACCGGAAGGAAAGAAAAAGCAGAACTTAAAATGCGTGAGGTTCGACGTCAATGGGGAGTGTCGGGTTCTACTGATTGCAAACAGAGACATATCAAAGGGGGAGAGGTTGTACTATGACTACAATGGAAGCGAGCATGAATATCCAACGGAACATTTCGTGTAA 1029 0.4674 MSLRRRTLALKPASKSPSIGKSFDCDDVCCEECGSGHSPAKLILCDKCDRGYHLFCLRPILVAVPNGSWFCHSCSKNKKPKSFPLIQTKIIDFFRIQRSPQAPQISSQDIRKKRKRATSLVVSKKKRKLLPFCPSEDPSRRLEQMASLATALTATNAEFSNELTYMPGMAPRSANRPSLENGGMQVLSKEDADTLNLCRSMMERGECPPLMVVFDPQEGFTVEADKWIRDLTIITEYVGDVDYLRNRENDDGDSMMTLLSASDASQTLVVCPDKRSNIARFINGINNHTPEGKKKQNLKCVRFDVNGECRVLLIANRDISKGERLYYDYNGSEHEYPTEHFV 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2122g00008 342 Pfam SET domain 265 330 IPR001214 GO:0005515
Pral2122g00008 342 SMART PHD_3 29 75 IPR001965 -
Pral2122g00008 342 FunFam Histone-lysine N-methyltransferase ATXR5 114 342 - -
Pral2122g00008 342 ProSitePatterns Zinc finger PHD-type signature. 30 74 IPR019786 -
Pral2122g00008 342 CDD SET_ATXR5_6-like 205 342 - -
Pral2122g00008 342 SUPERFAMILY FYVE/PHD zinc finger 21 81 IPR011011 -
Pral2122g00008 342 Gene3D SET domain 114 342 IPR046341 -
Pral2122g00008 342 ProSiteProfiles SET domain profile. 208 330 IPR001214 GO:0005515
Pral2122g00008 342 Pfam PHD-finger 30 76 IPR019787 -
Pral2122g00008 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 84 IPR013083 -
Pral2122g00008 342 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 102 340 - -
Pral2122g00008 342 ProSiteProfiles Zinc finger PHD-type profile. 27 77 IPR019787 -
Pral2122g00008 342 SUPERFAMILY SET domain 200 332 IPR046341 -
Pral2122g00008 342 CDD PHD_RSF1 30 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2122g00008 Pral-Chr2122 32021 34236 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2122g00008 26 91 C2H2 Transcription Factor Family AT3G01460 36.364 4.91e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral2122g00008 PHD 5.3e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2122g00008 K24406 - qsa:O6P43_014972 546.584