Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2119g00004 ATGGCTATGTCTGTGTCTTGTTTCTTCTTGTTTCAGTTTATGGCCATTGCTTTCTCTGCTGTGGCTTCTTTTGCTATTGATGGAAGCTGGCATGATGCTCATGCAACCTTCTATGGTGACATGTCGGGAGGCGAAACCATGCAAGGAGCTTGTGGTTATGGAGACCTCTTCAAGCAAGGCTATGGCCTGGAAACGGCAGCCCTAAGCACAGCTCTCTTCAACAATGGCCTCACCTGCGGCGCCTGCTTCGAACTCGAGTGCGTCAACGACCCGCAATGGTGCATCCCCGGCGCCGGCACCATCAAAATTACGGCCACCAACTTCTGTCCGCCCAACCACACTCCTCCGGACGTCAATCACTGGTGCAACCCTCCCCAGCAACACTTCGACCTCTCCATGACCATGTTCACCAGGCTCGCTCCCTACAAGGCCGGCATCATCCCGGTTCGCTACCGCCGTGTCGCCTGCGCCAAATTCGGCGGCGTCAAGTTCGAGGTCAAGGGCAACCCTTACTGGATAACAACGCTGTTTTTCAATGTGGCGAACGCCGGCGACATCACAGACGCGAAGATAAGGGGCGGCAAAGGCGGCGGCGGGTGGATTCAGATGTCGAGGAATTGGGGTCAGGTTTGGCAGACAGGGACGAACCTGATGGGACAGAGTTTGTCGTTTAAGGTTACTACGAGTGATGGGAAGATGTTGGAGTTTGATAATGTTGTGCCATCGAATTGGCAATTTGGTCAGACTTTTTGA 753 0.5392 MAMSVSCFFLFQFMAIAFSAVASFAIDGSWHDAHATFYGDMSGGETMQGACGYGDLFKQGYGLETAALSTALFNNGLTCGACFELECVNDPQWCIPGAGTIKITATNFCPPNHTPPDVNHWCNPPQQHFDLSMTMFTRLAPYKAGIIPVRYRRVACAKFGGVKFEVKGNPYWITTLFFNVANAGDITDAKIRGGKGGGGWIQMSRNWGQVWQTGTNLMGQSLSFKVTTSDGKMLEFDNVVPSNWQFGQTF 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2119g00004 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 161 IPR007112 -
Pral2119g00004 250 Gene3D - 161 250 IPR036749 -
Pral2119g00004 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 171 250 IPR007117 -
Pral2119g00004 250 PANTHER EXPANSIN-A15 8 250 IPR002963 GO:0009664
Pral2119g00004 250 CDD DPBB_EXPA_N 30 156 - -
Pral2119g00004 250 PRINTS Expansin signature 160 172 IPR002963 GO:0009664
Pral2119g00004 250 PRINTS Expansin signature 238 250 IPR002963 GO:0009664
Pral2119g00004 250 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Pral2119g00004 250 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Pral2119g00004 250 PRINTS Expansin signature 136 149 IPR002963 GO:0009664
Pral2119g00004 250 PRINTS Expansin signature 172 193 IPR002963 GO:0009664
Pral2119g00004 250 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Pral2119g00004 250 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Pral2119g00004 250 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Pral2119g00004 250 Pfam Lytic transglycolase 65 151 IPR009009 -
Pral2119g00004 250 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
Pral2119g00004 250 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Pral2119g00004 250 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Pral2119g00004 250 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Pral2119g00004 250 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Pral2119g00004 250 PRINTS Expansin/Lol pI family signature 238 250 IPR007118 GO:0005576
Pral2119g00004 250 Gene3D - 15 157 IPR036908 -
Pral2119g00004 250 SUPERFAMILY Barwin-like endoglucanases 13 179 IPR036908 -
Pral2119g00004 250 SMART dpbb_1 65 151 IPR007112 -
Pral2119g00004 250 SUPERFAMILY PHL pollen allergen 160 250 IPR036749 -
Pral2119g00004 250 Pfam Expansin C-terminal domain 162 241 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2119g00004 Pral-Chr2119 27142 28978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2119g00004 19 250 Expansin Gene Family AT5G39280 63.793 5.32e-112 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2119g00004 - - qsa:O6P43_002576 374.015