Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2119g00002 ATGGGTTCTGTTTGTGGTTGTTTAAGTGTTGAGAATCTTGAAGATTATGTAAATCCAAATAGCTCTGTATATAGAAATTGCATGTGCTTCAGTTGCTTCATACATAACTTTTTGAATGTGTATAATACAATATTTCGTAGGCGTGAAGTGCATTCCATTTCTTCATCCGTCCAGGGGGCAGCATCTATGACTTCTACGGCATCCCTGGATAGTTCATTATCAGGGATGTACCGTGCTCCTCCCCGGCCTTTGCCATATGATGCAGACTCTAGGTATTTTCTCTCACAACGTGATGGACTAGTTTCAAGACGTGAGAAGGGTTCAAGTCATTCAAATGAGGAATCACAACCTCTAAGAAGTGATCTAGATGTGGATTCAGACTCATTGAGTATGGGAGACAAATGGAATGAATGTGCCTGTGAAAATGGATCAAAGGAATACCTTTCTAAGTCCTCACTAAGACTTTCATCAGCAAAATATACACCTGGAGCTGCGGCGGTCTATGCACCATTAGAAGATGAAGATGTTTGTCCAACATGTCTTGAAGAATATACCCAAGAGAATCCAAAGATAATGACAAAATGCTCTCACCATTTTCATCTTGGTTGCATCTATGAGTGGATGGAGAGAAGTGAAAACTGTCCAGTGTGTGGGAAGGAGATGGAATTTGATGAAACGCCATAA 684 0.4064 MGSVCGCLSVENLEDYVNPNSSVYRNCMCFSCFIHNFLNVYNTIFRRREVHSISSSVQGAASMTSTASLDSSLSGMYRAPPRPLPYDADSRYFLSQRDGLVSRREKGSSHSNEESQPLRSDLDVDSDSLSMGDKWNECACENGSKEYLSKSSLRLSSAKYTPGAAAVYAPLEDEDVCPTCLEEYTQENPKIMTKCSHHFHLGCIYEWMERSENCPVCGKEMEFDETP 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2119g00002 227 CDD RING-H2_AIRP1-like 173 221 - -
Pral2119g00002 227 MobiDBLite consensus disorder prediction 102 126 - -
Pral2119g00002 227 FunFam E3 ubiquitin-protein ligase At3g02290-like 154 224 - -
Pral2119g00002 227 Pfam RING-H2 zinc finger domain 174 217 IPR024766 GO:0008270
Pral2119g00002 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 225 IPR013083 -
Pral2119g00002 227 SMART ring_2 177 217 IPR001841 -
Pral2119g00002 227 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Pral2119g00002 227 SUPERFAMILY RING/U-box 171 223 - -
Pral2119g00002 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 57 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2119g00002 Pral-Chr2119 17833 25209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2119g00002 1 227 C3H Transcription Factor Family AT5G15790 58.621 7.46e-91 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2119g00002 - - pvy:116140968 360.533