Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2118g00010 ATGTTCAAGTCAAATGAAATGGTTAAGAAGCAGACAGCTCTAAAGGGAGATAGGAAAGTCTCATTTCTCGTCAGTATCTCACTTGTCTTCATGCTTCATGTGATGTGCATTTACTGGTGGTATCAAGATGATGATCTTTCATACTCACCACTCATCTTGCTTCCTCCAAAAACAACGCCTCATTTCTGGCATGCAGTATTCATCGTTCTGATTAATGACGTACTTGTGCGGCAAGCCGCAATGTCTTTCAAGTGCTTGCTACTTATATATTTCAAGAATGATAGGGGTCATAGCTTCCGTCTGCAGGCTCAAATATTAACGCTGGTTGAGCACGCACTACTGCTGTACCGTGCCTTGTTGCCAGCTCCTGTTTGGTACCGATTTTTCCTAAACAGGGAATATGGAAGTCTCTTTTCATCGCTGACCACAGGGTTGTACCTAACCTTCAAGTTAACATCTGTTGTTGAGAAGGTCCAATGCTTTCTTTCTGCCTTAAAAGCATTATCAGGAAAGGATATTCTCTATGGTGTTCATGCTACAAACGAACAGGTAACTGCCGCAGGCGACCTTTGTGCTATATGCCAGGAGAAGATGCGTGGTCCTATCCTGTTACGCTGCAAACACATTTTCTGTGAGGAGTGTGTGTCAGAATGGTTTGACAGAGAAAGAACTTGCCCGCTATGTAGGGCATTGGTGAAGGCTGGCGATATTCGGTCTTTCGGGGATGGATCGACAAGTCTGTTTTTCCAGCTATGTCCTTACATGTTTGATGAACTCAACTTGATTTGGAAATGGAATGGCACAAGAATAGAGAAAGAAAATCAAATCACAGATCTCATCGTTGCTAGACCGAAGGTGGGTCGTCGCTCAATGAAGAAGGTCACTGTCACCATTGTTGTCTCTACAGAGGAGGCCATTGTTCCAGTCATTTACTGGCTCATCAGAGAAGATGGTGGAGACACTTGGAATCCCTTTCTGGGTTTTGCGCCTCCAATTCTTCAATTTTTGCTATACACTAGTCTTGAACAATTCTTTAAGGTGCTGGGGGAGTCGGATCTTATTGTTGCTCTTGAAAAAGCTTTTGCACTCATAAGTGCTTCTTCGCCGCAGAAAGGTCAAAGGCGATCAGTAAAGAAATTGACTTGGGAGCCTCAAATTTCTATAGTTCTAGTCATCCATACTCACCAAATGCAGCAAGGGCTCACAGCTACTCCCTTGTCTCATTCAAGCTCATCTGTTTCAACACCTCGTGGAATAGGTCCAACTTCATGGATAGGCGACTTTGAATTCCACAGTGCTGGGTCGTCTGCTGATTTTCCCCAACAAAATGCAGATAGTAATTCAAAAGATGAAACAGAGTTGCTCTCTGTGTCTTGGAATCAGGACTTTGGTTGCTTTTCTGCTGGCACTAGCCATGGCTTTCGAATTTACAATTGTGTGCCTTTCAAGGAGACTTTTAGACGTGACTTGAGAGGTGGTTTTAAAATTGTAGAGATGCTTTTCCGGTGCAACATTCTAGCACTTGTTGGCGCTGTAACTAATCCATTTTACCCTCCCAATAAAGTTATGATTTGGGATGATCATCAGAGCAGGTGCATCGGTGAATTTACATTTAGGTCTGAGGTTCGTGCAGTGAGATTAAGACGCGATCGAATTGTAGTAGTTCTTGAGCACAAGGTTTATGTTTATAACTTCATGGATTTGAAGCTTCTTCAACAGATTGAGACTCTGGCTAATCCTAAGGGATTGTGCTGTCTTTCTTATCATCCAAATACATTTGTTTTGGCTTGTCCAGGTGTTCACAGAGGACAAGTCCGGGTTGAACACTTTGGTCTGAACATGACAAAATTAATTGATGCTCATGATTCTCAAATTGCATGCTTAACTTTGACAATGGATGGGCTCCTTCTTGCAACTGCTAGTGCAAAGGGCACTCTAATTAGAATCTTCAACACAATGGATGGCACTCGGTTACAGGAAGTGAGAAGGGGGGTTGATAGAGCTGAAATCTATAGTATTGCTTTATCGCCAAATGTCCAGTGGTTGGCAGCATCAAGTGAGAAAGGTACCATTCATATGTTCAGCCTGAGAGTCAGAGTTGTTGGGATGGATACATTGCCTGCCCCAACTACACCCCAAAGCCCTGCACTGCTTCATCAGAATTCTTCGACCTCTTTAGATGCATTGCTTTCTCCAAATACTGGTTCTAACCCCAGTTCATCATTGTCTTTCATGAGAGGGGTTTTGCCAAAATATTTTAGCTCAGAATGGTCATTTGCACGGTTCCGCCTGCCAGAGAACACGCAATTTATTTTGGCTTTTGGACCTCGGAACAGTGTCATAATAGTTGGCTTGGATGGGAGTTTTTACAGGTGCAGCTTTGATCCAGTCCATGGCGGAGAGATGTTGCAGCAGGAATATGTTCGGTTTTTGAAGTCTGAAAGTAGGCCAACGTGA 2457 0.4335 MFKSNEMVKKQTALKGDRKVSFLVSISLVFMLHVMCIYWWYQDDDLSYSPLILLPPKTTPHFWHAVFIVLINDVLVRQAAMSFKCLLLIYFKNDRGHSFRLQAQILTLVEHALLLYRALLPAPVWYRFFLNREYGSLFSSLTTGLYLTFKLTSVVEKVQCFLSALKALSGKDILYGVHATNEQVTAAGDLCAICQEKMRGPILLRCKHIFCEECVSEWFDRERTCPLCRALVKAGDIRSFGDGSTSLFFQLCPYMFDELNLIWKWNGTRIEKENQITDLIVARPKVGRRSMKKVTVTIVVSTEEAIVPVIYWLIREDGGDTWNPFLGFAPPILQFLLYTSLEQFFKVLGESDLIVALEKAFALISASSPQKGQRRSVKKLTWEPQISIVLVIHTHQMQQGLTATPLSHSSSSVSTPRGIGPTSWIGDFEFHSAGSSADFPQQNADSNSKDETELLSVSWNQDFGCFSAGTSHGFRIYNCVPFKETFRRDLRGGFKIVEMLFRCNILALVGAVTNPFYPPNKVMIWDDHQSRCIGEFTFRSEVRAVRLRRDRIVVVLEHKVYVYNFMDLKLLQQIETLANPKGLCCLSYHPNTFVLACPGVHRGQVRVEHFGLNMTKLIDAHDSQIACLTLTMDGLLLATASAKGTLIRIFNTMDGTRLQEVRRGVDRAEIYSIALSPNVQWLAASSEKGTIHMFSLRVRVVGMDTLPAPTTPQSPALLHQNSSTSLDALLSPNTGSNPSSSLSFMRGVLPKYFSSEWSFARFRLPENTQFILAFGPRNSVIIVGLDGSFYRCSFDPVHGGEMLQQEYVRFLKSESRPT 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2118g00010 818 CDD RING-HC_RNFT1-like 189 229 - -
Pral2118g00010 818 SUPERFAMILY WD40 repeat-like 434 696 IPR036322 GO:0005515
Pral2118g00010 818 SUPERFAMILY RING/U-box 184 233 - -
Pral2118g00010 818 ProSiteProfiles Zinc finger RING-type profile. 191 229 IPR001841 -
Pral2118g00010 818 SMART WD40_4 611 651 IPR001680 GO:0005515
Pral2118g00010 818 SMART WD40_4 529 564 IPR001680 GO:0005515
Pral2118g00010 818 SMART WD40_4 654 695 IPR001680 GO:0005515
Pral2118g00010 818 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 449 811 - -
Pral2118g00010 818 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 175 238 IPR013083 -
Pral2118g00010 818 ProSitePatterns Zinc finger RING-type signature. 206 215 IPR017907 -
Pral2118g00010 818 Gene3D - 449 725 IPR015943 GO:0005515
Pral2118g00010 818 SMART ring_2 191 228 IPR001841 -
Pral2118g00010 818 Pfam Zinc finger, C3HC4 type (RING finger) 189 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2118g00010 Pral-Chr2118 45283 57943 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2118g00010 1 251 C3H Transcription Factor Family AT5G01960 71.713 3.93e-132 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2118g00010 K22991 - aprc:113864793 669.848