Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2112g00002 ATGTCTGAAAGGCGGGTTTCTGATCCTAGCAAGCTTCATCTCAAGAAGAAGGACCTCGCTCAAATTCATAAAGCTGCTCGTGTCTTGAGGGATCCTGGTACGACGTCGTCCTGGAAGTCACCTCTTAGTTCATCGAGATCCGTTGCTGCTGCTTCCGCTTCTGCATGGAAGAACAATTTGTACAGTGGAAAAGAGAATAGCGGGTTGTTGTGCAACTGGGAGAATCACAAATCGTCAGGCGACAAGAGTGGAGTGGCCAAAAACGACTTCGTAGAGGAAGAAGAAGATGATGGTGATGATGAGGTTGCTGCTGCTGGCGGCGCCAACGACGGTTCTTCTTCATCGCTTCTGGGAAGTTTCGAGGATTCCTTGAGTGATGCTCGAGGTTGTGATTCGAAGAGCAACACTTACTTGCGAGATGGGAGACGTTCTTCTATTTTCCGGTGTAAAGACGCTAATAATTTTTCTTCGGCCAGAAGAAAAATGGGCAGTATCAAGAGAAAGAGTAAGAAAACTAACACATATTCGGATAACTTGTCAAAATACCGGAAACCAGCAACCAATTTGGGTAGGAAGTTTGTAAATTCCAAGACATTTCTAGAGGACTCAATTGAACAGTCTGATGATACTGAGGATTACTACAATTCTGAGGATTTAAGGCGAATTTTAGGGTCGTCTCGTTTGCTGTTGAAACTCAAGCGTAAGAATTGGTCTCGTTCTTCCTCAAAGTTACTGAGAGGTAGCCGAACTGAGGACTCTTCTTATACTTATAGCACGCCTGCGTTATCAACCTGCTCTTATAATAGGTTTGGTCACTATAATTCAAGTACTGTTGGATCCTGGGATGCCACGACAAGCTCATTGAATTATGGTGATGATGAGGTAGACGATCACTTGGATTTGCCTGGCCAGAGGGGATGCGGGATTCCTTGTTATTGGTCCAAGAGGACTCCAAAAAATAGAGGGATGTGTAGGAGTTGTTATTCTCCTTCTCTTTCAGAGACTTTGAGGAGGAAAGGAAGTAGCTTATTTTGTGGAAGTCAAAGTATCTATACAAGACACCGGAGGTCCTTATCATCAAGCCCTAACAAGTGGAGAGTTTCTTCAAGGAGCGCTCATGGTGTTCTTCCACTGCTCACCAGCAGTGGTGATGTTAGAGGAGGCTCGTCTGTAGGAACTGGAAGGAGCGATGATGAACTTTCCACGAACTTAGGGGAACTTTATCTTGAGGGTTTAAGCAGGTTAGATGGAAGGAGATGGTCATCAAGTTGTAGGAGTCAAGATGTTTTGGAGATTGTGGCTGTGGAGGGGGAAGGGGATGAGGAAGGCACACTAGAAAATGCTACTAGTTTCAGTCAGAAGTATAAACCTATTTCCTTTGATGACTTGATTGGCCAGAACATTGTGGCTCAGTCACTTATGAATGCTATTTCAAGGGATAGAATTGCGCCCATTTATCTTTTCCAAGGTCCACGTGGCACTGGTAAAACTTCAACAGCCAGAATTTTTGCAGCTGCTCTTAATTGTAAGGCTCCTGATTTAAGTAAGCCTTGTGGATACTGCAGGAATTGCACTGATCTCAATTCTGGAAAGAGTAGGAATTTCTTGGAAGTTGATGGAACCAATAAGCAAGGGATTGATAGTGTTAGACATCTACTGAAAAGACTACCGGCAGGATCACCATCAGCCTCCTCACAATACGCTGTATTTGTAATAGATGAGTGTCACTTGCTTCCTTCTAAGACATGGCTGGCATTTCTGAAGTTTCTGGAAGAACCACCTAGTCGAGTTGTGTTCATATTTATAACAACTGATCTTGAGAATGTTCCACGGACAATACAGTCTCGATGCCAGAAGTACCTTTTTAACAAAATTAAAGATGGTGATATTGTGGCCAGATTAAGGACACTATCTGCTGAAGAGAACCTGGATGTTGAAAAAGATGCGCTGGACCTTATTGCTATGAATGCGGATGGTTCGCTTCAAGATGCAGAAACTATGTTAGAACAACTGAGTTTGCTGGGGAAAAGAATTACTGCTTCACTTGTCAATGAACTTGTGGGTGTTGTCTCGGATGAAAAACTACTAGAGCTGTTGGAGATAGCAATGTCATCAGATACCTCAGAAACAGTGAAGAGAGCCAGAGAAGTGATGGATTTTGTGGCTGATCCGATGATTTTGATATCACAAATGGCATGCCTCATTATGGACATCATTGCCGGATCATATAGTGTCATTGATGCCAAACCTAGTGATTCGTATTTTGGTGGACGAAGTTTGAATGAATCGGAGTTGGGGAGGTTAAAGCATGCTTTGAAGCTGCTCTCAGAGGCTGAGAAACAGTTAAGGACTTCTAGTGAACGCTCAACATGGTTCACAGCTACCCTGCTACAGCTTGGTTCAATGCCTTCACCAGATCTTACCCAGTCAGGCACTGGAAGGAGGCAGAGCGGCAAGACTTCCGAATATGATCCATCAAGTGCTTCAAGAGAAGTTACTGCTCCAAAGCATAGATCGGATGTTAGATATATTTCTCGAATGTCAACATCCCCTATTTCCCAGCAACAACCTTTGAATGGCGATTCTAGAGGTCAATGGGATGTATCGTCTAAGTCAGATGGTTTCAGCTTGAGTTCACAGCCATCAAGTAGTCCAGTTCTAGGAGATGATGATGCAACGCCGGCTTCATCTGATGATCTTATTACTGGGAATATGATGGTAAGATGTGTAAATTCAGGGAAGTTACTTGATATCTGGGCAAGTTGTATAGGGAGGTGTCACTCTAAGACGTTGAGGCAGCTTCTCCACAATCATGGAAATCTTGTATCTATTTGTGAAGTTGAAGGTGTTCTGGTTGCATATGTTGCATTCAGAGATAGAGATGTTAAAATTAGGGCTGAAAGGTTTTTGAGTAGTATTACAAATTCAATGGAAATGGTACTCAGGTGCAATGTGGAGGTTAGAATTATTCATTTGCCAGATGGTGGAGGTGAAAATCTACCTGGTATCATGCAGGCAGGATCAACAATGGGAAGTGAGAGACCAAAAAAAGGAGACCATGCAAATGAAAAGGGTAGTCATTCTAGTTTTCTTCCTTTGCTGGATGAAAACTTGCAGCCTGTCATTGATTCATCAGATTTGACGGCTGGGAGGAACTGTGTGAGAGAGGATAAACAGGAAATTCCCACCCACAGAGTTGAATCTATTATACGTGAGCAGAGGCTGGAAACTGCGTGGCTTCAGGCTGTAGAAAAAGGTTCTCCAGGATTTTTGAATCATCCAAGACCTGAGAAGAATCAGGTACTGCCTCAGGAAAATGTTATCTGTAAAGACCCAGTAGAGTCCATTGATTCAACAAGGTTTTCCACTCAGCGTTGGGAAGATGACCCTCATCATGAAGTCAAAGTTTTGAAAGTTAAACACGGAAGAATCATACAAAATGGTCAGATTAGTAGAAACGGAGCCCGATGTCCCATGTCCCCAAGTTTATTGCACGGTAGCAGTTTAGCATCAAATTCCAACAAAGATAATCTGGGATATGAGTCAGGCTCCGGGGCCGCAGGTTGCGTGGGACTTCTATGTTGGAATAACTGCAAGCGAAGAAGGGTAAAGGTTAGAACACAAAAAGTTGGACATTTTACATTATTTAGTGACTGTGGTAAGTCAATGAAAAGGGAGGTCAAAAGGTAA 3690 0.4317 MSERRVSDPSKLHLKKKDLAQIHKAARVLRDPGTTSSWKSPLSSSRSVAAASASAWKNNLYSGKENSGLLCNWENHKSSGDKSGVAKNDFVEEEEDDGDDEVAAAGGANDGSSSSLLGSFEDSLSDARGCDSKSNTYLRDGRRSSIFRCKDANNFSSARRKMGSIKRKSKKTNTYSDNLSKYRKPATNLGRKFVNSKTFLEDSIEQSDDTEDYYNSEDLRRILGSSRLLLKLKRKNWSRSSSKLLRGSRTEDSSYTYSTPALSTCSYNRFGHYNSSTVGSWDATTSSLNYGDDEVDDHLDLPGQRGCGIPCYWSKRTPKNRGMCRSCYSPSLSETLRRKGSSLFCGSQSIYTRHRRSLSSSPNKWRVSSRSAHGVLPLLTSSGDVRGGSSVGTGRSDDELSTNLGELYLEGLSRLDGRRWSSSCRSQDVLEIVAVEGEGDEEGTLENATSFSQKYKPISFDDLIGQNIVAQSLMNAISRDRIAPIYLFQGPRGTGKTSTARIFAAALNCKAPDLSKPCGYCRNCTDLNSGKSRNFLEVDGTNKQGIDSVRHLLKRLPAGSPSASSQYAVFVIDECHLLPSKTWLAFLKFLEEPPSRVVFIFITTDLENVPRTIQSRCQKYLFNKIKDGDIVARLRTLSAEENLDVEKDALDLIAMNADGSLQDAETMLEQLSLLGKRITASLVNELVGVVSDEKLLELLEIAMSSDTSETVKRAREVMDFVADPMILISQMACLIMDIIAGSYSVIDAKPSDSYFGGRSLNESELGRLKHALKLLSEAEKQLRTSSERSTWFTATLLQLGSMPSPDLTQSGTGRRQSGKTSEYDPSSASREVTAPKHRSDVRYISRMSTSPISQQQPLNGDSRGQWDVSSKSDGFSLSSQPSSSPVLGDDDATPASSDDLITGNMMVRCVNSGKLLDIWASCIGRCHSKTLRQLLHNHGNLVSICEVEGVLVAYVAFRDRDVKIRAERFLSSITNSMEMVLRCNVEVRIIHLPDGGGENLPGIMQAGSTMGSERPKKGDHANEKGSHSSFLPLLDENLQPVIDSSDLTAGRNCVREDKQEIPTHRVESIIREQRLETAWLQAVEKGSPGFLNHPRPEKNQVLPQENVICKDPVESIDSTRFSTQRWEDDPHHEVKVLKVKHGRIIQNGQISRNGARCPMSPSLLHGSSLASNSNKDNLGYESGSGAAGCVGLLCWNNCKRRRVKVRTQKVGHFTLFSDCGKSMKREVKR 1229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2112g00002 1229 Gene3D - 442 623 IPR027417 -
Pral2112g00002 1229 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 453 856 - -
Pral2112g00002 1229 MobiDBLite consensus disorder prediction 92 115 - -
Pral2112g00002 1229 MobiDBLite consensus disorder prediction 159 181 - -
Pral2112g00002 1229 CDD AAA 464 622 - -
Pral2112g00002 1229 FunFam DNA polymerase III subunit gamma/tau 626 688 - -
Pral2112g00002 1229 MobiDBLite consensus disorder prediction 802 828 - -
Pral2112g00002 1229 MobiDBLite consensus disorder prediction 26 45 - -
Pral2112g00002 1229 NCBIfam DNA polymerase III subunit gamma/tau 450 799 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Pral2112g00002 1229 Coils Coil 768 788 - -
Pral2112g00002 1229 CDD HLD_clamp_pol_III_gamma_tau 625 688 IPR045085 -
Pral2112g00002 1229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 474 671 IPR027417 -
Pral2112g00002 1229 SMART AAA_5 482 644 IPR003593 GO:0016887
Pral2112g00002 1229 MobiDBLite consensus disorder prediction 802 898 - -
Pral2112g00002 1229 Gene3D - 627 688 - -
Pral2112g00002 1229 Pfam DNA polymerase III, delta subunit 465 625 - -
Pral2112g00002 1229 FunFam DNA polymerase III subunit gamma/tau 446 624 - -
Pral2112g00002 1229 MobiDBLite consensus disorder prediction 844 890 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2112g00002 Pral-Chr2112 7478 14057 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2112g00002 444 740 Core DNA Replication Machinery Family AT1G21690 25.484 3.80e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2112g00002 - - gmx:100791561 1487.24