Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2100g00002 ATGGTGGTGGGTCATGGAAGTAGCCGAGCGTTAGAGGATCGGTCCGTTAAGAAGGAGGTAGCCGACCACCCTCGTGCTTCTACGGCTGCCGGAAAAGCCGTTACTCCTCCGAGGCACGGTAAAAATACGGATGACGATGATGACTTGACCCTGGCCAATTGGTCAAAGTCTCCCAAACGAGTCCCTCCTTCAACCACGCACAAACGGAACAAGATGGTGCAGAATCAACACAGGCTTCAGAAAAAACATTTGGTTTCTATACCTAATCAAGGCTTATCCGATCAGGCACAAAAGCTTGCAAGCTCCACTAAGGTGGCAACAGACAGGACATTATCAGCAGGAGAGGCCAGGTCGTCTGCTGTGTTTCGAGCGGAGATGATCCAATCAAACTTAGATCCGAGGGTCCCTAGCTTTGTGAAGTCATTGGTCAGATCACATGTTGCTGGTTGTTTTTGGATGGGGCTCCCTGCGTTTTTCTGTAAAAAACACTTACCGGATAGTGACACTACCATTACTTTGGAAGATGAATCTGATAAAGAATACCAGTTGAAATACATTGCTTGCAAGACAGGTTTAGGCTCTGGTTGGAGGCAGTTTTCTGCAGTCCACAAATTGCAGGAGGGAGATGTTTTGGTTTTTCAGTTAGTTGAGCCTTCTAAATTTAAGATTGTAAAGCAAGAAGGATGGCATGTATGA 696 0.4655 MVVGHGSSRALEDRSVKKEVADHPRASTAAGKAVTPPRHGKNTDDDDDLTLANWSKSPKRVPPSTTHKRNKMVQNQHRLQKKHLVSIPNQGLSDQAQKLASSTKVATDRTLSAGEARSSAVFRAEMIQSNLDPRVPSFVKSLVRSHVAGCFWMGLPAFFCKKHLPDSDTTITLEDESDKEYQLKYIACKTGLGSGWRQFSAVHKLQEGDVLVFQLVEPSKFKIVKQEGWHV 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2100g00002 231 SMART B3_2 138 227 IPR003340 GO:0003677
Pral2100g00002 231 Pfam B3 DNA binding domain 138 223 IPR003340 GO:0003677
Pral2100g00002 231 SUPERFAMILY DNA-binding pseudobarrel domain 131 224 IPR015300 -
Pral2100g00002 231 MobiDBLite consensus disorder prediction 38 53 - -
Pral2100g00002 231 ProSiteProfiles B3 DNA-binding domain profile. 138 229 IPR003340 GO:0003677
Pral2100g00002 231 CDD B3_DNA 136 223 IPR003340 GO:0003677
Pral2100g00002 231 Gene3D - 114 227 IPR015300 -
Pral2100g00002 231 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 64 222 IPR044837 -
Pral2100g00002 231 MobiDBLite consensus disorder prediction 1 72 - -
Pral2100g00002 231 MobiDBLite consensus disorder prediction 10 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2100g00002 Pral-Chr2100 6886 9155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2100g00002 108 223 B3 DNA Binding Superfamily AT3G19184 46.552 1.19e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral2100g00002 B3 8.1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2100g00002 - - gmx:100819237 210.69