Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral20g00001 ATGGTCCAGTGTCCCGCGGACTCCCCTCGGCGTCAACCCATCCTTCAGCCCGTTACTCCGTCTCCTTCCCTCCTTAAATTCGCTCACTCTCCCCGACCCCGTCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATATTTCATCGCTCTCTTTCTCATTCTCTATAGCTTGCGACCTCGCCGTCAGCTCTTCTCTGCGTTATATTGCTGTCTCAGGTTCTTCTTCTTCCGCTCCCTCGGGTTCTTCTTCTTCAGCTCCCCTCTCGGCGACGCTTCCCCTCTGGTTCTCTACATGGAGGCAAACGAACACGCGGTTCTTGATTTTTCTCCCTTTCAAGACCAAGATGAGCTTCTTCCCGTGCATCGCTTGTAGCGATGAATCCTTTTCGTTGCCAGCTCCAAAGCAGTTGGGTTATGGCCCTCCTGAGGATTTGTTCGGCCTCGATATGGAACCCAAGCGGAGCAATGGCAGCTCTCAAATATCGGAGCCCAGGTCATGGTTTGGTCCAAATGGACAGTACATCAAAGAGTTACCTTGCCCAAGCTGCCGGGGAAGGGGCTATACTCCTTGTACAGAGTGTGGTATTGAAAGATCAAGATCAGACTGTCCAAAGTGTAGTGGGAAGGGTATTGTTACTTGCCACCAGTGTTCTGGAGCTCGTGTTACTTGGGAAGAGTCAATTGATGAAAGACCATGGGAAAGAGCACGTTCCATTTCCCCACTCAAAGTAAAGGAAGATGATGAAGTTGATAATTTAGACATAAAGCTGGATGTGAAGAAAAAATCAAAGCGGATTTACCAATCACCGTCTCCTGAAGTTGGATTAAAGATTAGTCGCTCATTAAAAGATCTCAATGCAAAAACTGGTCTGTTTAGCAAGAGAATGAAGATTATCCATCGTGATCCCATGCTTCATGCACAAAGAGTGGCTGCAATTAAGAAATCCAAGGGAACTGATGCAGCTAGAAAGCGCACCTCTGAAACTATGAAAGCTTTCTTTAGTAACCCAGAAAATCGCCATAAAAGGAGCATTGCCATGAGAGGAGTGAATTTCTTCTGCCAAAACTGTGGAAGGGAAGGGCATAGGAGACACTACTGTCCAGAACTGAAGGGTAGTTTGGTGGATCGGCAATTCACGTGCCAGCTATGTGGGGAAAAAGGCCATAACAGAAGAACATGCAGCAAGTTAAGGATAGGCCATCGGAACGGCAGAACTGTAAAACTTCATCGCTGTAAAATATGTCGTCGATATGGCCATAATCGCAGGACCTGCCCTCAGTTAGTTGGTACATCCAAAACGACAGCTTCTCCAAGACCATACAAGTGTTGTTTGTGCCACAAGAAGGGACATAATATCAGGACATGTCCTACAAGGGCTATTAGTGTTAAACAACATGCTCAAGATTAA 1416 0.4689 MVQCPADSPRRQPILQPVTPSPSLLKFAHSPRPRHLSLSLSLSLSLSHISSLSFSFSIACDLAVSSSLRYIAVSGSSSSAPSGSSSSAPLSATLPLWFSTWRQTNTRFLIFLPFKTKMSFFPCIACSDESFSLPAPKQLGYGPPEDLFGLDMEPKRSNGSSQISEPRSWFGPNGQYIKELPCPSCRGRGYTPCTECGIERSRSDCPKCSGKGIVTCHQCSGARVTWEESIDERPWERARSISPLKVKEDDEVDNLDIKLDVKKKSKRIYQSPSPEVGLKISRSLKDLNAKTGLFSKRMKIIHRDPMLHAQRVAAIKKSKGTDAARKRTSETMKAFFSNPENRHKRSIAMRGVNFFCQNCGREGHRRHYCPELKGSLVDRQFTCQLCGEKGHNRRTCSKLRIGHRNGRTVKLHRCKICRRYGHNRRTCPQLVGTSKTTASPRPYKCCLCHKKGHNIRTCPTRAISVKQHAQD 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral20g00001 471 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 180 225 IPR036410 -
Pral20g00001 471 SUPERFAMILY Retrovirus zinc finger-like domains 406 462 IPR036875 GO:0003676|GO:0008270
Pral20g00001 471 SUPERFAMILY Retrovirus zinc finger-like domains 353 399 IPR036875 GO:0003676|GO:0008270
Pral20g00001 471 Gene3D - 408 470 - -
Pral20g00001 471 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 152 397 - -
Pral20g00001 471 SMART c2hcfinal6 413 429 IPR001878 GO:0003676|GO:0008270
Pral20g00001 471 SMART c2hcfinal6 382 398 IPR001878 GO:0003676|GO:0008270
Pral20g00001 471 SMART c2hcfinal6 444 460 IPR001878 GO:0003676|GO:0008270
Pral20g00001 471 SMART c2hcfinal6 355 371 IPR001878 GO:0003676|GO:0008270
Pral20g00001 471 Gene3D - 352 399 - -
Pral20g00001 471 ProSiteProfiles Zinc finger CCHC-type profile. 356 371 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral20g00001 Pral-Chr20 3568 8892 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral20g00001 95 464 C2H2 Transcription Factor Family AT5G20220 58.568 9.65e-157 449