Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2096g00002 ATGTTTTCATCACCTTCTAAATGCCTGAATGGCATCGCTTTTTCTTCCTCAATTTCTCAACATGATAGGCAGCATCAAAATTCTCCCTTCATTTCTAAGACATTGAGAAGAGACGATGTAATGCCCCCGCAAGGAACTTCCCTTACTCAGAGTGGGGAAGATGCGTCTTTCCCACCTTCACATTCTTGTTATCCGGAAATACACTCGGCAGCATTCGTTTCTCGACCCCCAGAAAGTGATGATATTTCATGGGGACCAGATCCCTTTCAGGATATTCTTAATCTATCTGTAAATGATTCCGTACAGAACGATCAGATGGAAAATAGTTCTTGTTTTATGTCTGATGACAACTCCAAAAAAACTGATTTTGGGGAGTGGGTAGATCAGTTAATGTCAGTCGATGAATCTCCTCATCCAAACTGGAGCCAGCTTCTTGTTGATGATAATGTACCGGATTCGAAATCAGAGGGGACCCACTCCACCAAGCAGCAGGATGCACCATCTGGAGAAGTTAATGCTCCTCCTACTTCAGCAACGAATGCACTACAAAGTAAGCCTAGAATGCGTTGGACTCCAGAACTTCATGAAGCTTTCGTGGAAGCAGTGAATAAGCTTGGTGGTAGTGAGAAGGCTACTCCTAAGGGTGTTTTGAACCTAATGAAAGTTGAGGGTCTTACTATATATCATGTGAAAAGCCATCTGCAGAAGTATAGAACAGCCAGATTCAAGCCCGAATCATCAGGAGGAGCCTCTGAGAAGAAGTCAACGTCAACCAAAGAAATGAAATCTTCAGACTCGACAGCCATGGGGATTACTGAGGCGTTGCGGTTGCAGATGGAACTCCAGAAGCGGCTTCATGAACAACTTGAGATTCAAAGAAAGTTGCAGATTCAAATAGAAAACCAAGGGAAGCGTCTTCAGATGATGTTTGAGAAACAAAGAGAAATGGAGGACGGCAAACACAAGACATTACCCTCCTCCTTAGACGGGCCCACGGTATTAAATTCCCCCGCGATTGAGGGTCAGAAACATCTGGAATCAGCAGTATCAATGCAACAACCGCGGGCGAAGAATGTTCTGGGGATGCCTGCACAAAGCAAGAGGTGGAAGGAACTAAAGTTACTAATGAAGAAGAGGCGGGGCATGACCAGTTGGGTGCACCGGCCTCCAAACGGGCGAAAAGCAGGTGACAGCAGAATTCTCTAA 1206 0.4511 MFSSPSKCLNGIAFSSSISQHDRQHQNSPFISKTLRRDDVMPPQGTSLTQSGEDASFPPSHSCYPEIHSAAFVSRPPESDDISWGPDPFQDILNLSVNDSVQNDQMENSSCFMSDDNSKKTDFGEWVDQLMSVDESPHPNWSQLLVDDNVPDSKSEGTHSTKQQDAPSGEVNAPPTSATNALQSKPRMRWTPELHEAFVEAVNKLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRTARFKPESSGGASEKKSTSTKEMKSSDSTAMGITEALRLQMELQKRLHEQLEIQRKLQIQIENQGKRLQMMFEKQREMEDGKHKTLPSSLDGPTVLNSPAIEGQKHLESAVSMQQPRAKNVLGMPAQSKRWKELKLLMKKRRGMTSWVHRPPNGRKAGDSRIL 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2096g00002 401 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 182 242 IPR017930 -
Pral2096g00002 401 NCBIfam myb-like DNA-binding domain, SHAQKYF class 185 239 IPR006447 GO:0003677
Pral2096g00002 401 MobiDBLite consensus disorder prediction 16 59 - -
Pral2096g00002 401 Gene3D - 184 243 - -
Pral2096g00002 401 MobiDBLite consensus disorder prediction 137 187 - -
Pral2096g00002 401 MobiDBLite consensus disorder prediction 239 266 - -
Pral2096g00002 401 SUPERFAMILY Homeodomain-like 183 239 IPR009057 -
Pral2096g00002 401 Coils Coil 272 292 - -
Pral2096g00002 401 MobiDBLite consensus disorder prediction 16 33 - -
Pral2096g00002 401 FunFam Myb family transcription factor 184 242 - -
Pral2096g00002 401 Pfam MYB-CC type transfactor, LHEQLE motif 269 315 IPR025756 -
Pral2096g00002 401 MobiDBLite consensus disorder prediction 43 57 - -
Pral2096g00002 401 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 176 345 IPR044848 GO:0003700
Pral2096g00002 401 MobiDBLite consensus disorder prediction 160 186 - -
Pral2096g00002 401 Pfam Myb-like DNA-binding domain 187 238 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2096g00002 Pral-Chr2096 10408 15387 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2096g00002 1 327 G2-like Transcription Factor Family AT3G04450 43.678 3.86e-72 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pral2096g00002 Myb_DNA-binding 6.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2096g00002 - - pcin:129312811 562.762