Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2092g00010 ATGATTTTGATTACTGGGTATTTCATATATCCATCACTTGTGGGAGGTTTCGGCGACTGGATGGACTTGGATAACATTGAGTGTGTGTCATCCTCGGATGGTATTGACGAGGACGAGATCCACCATCACGGTATACATCCTCACTCCCATCATCACTCTGAGTTTTCATCCTCAAAGACTCGCAATGGCGCCATCAGTATGGGCCCCACGGCCATTGCTCCGGCAACCAGCGTCCACGAGTTGCTGGAATGCCCTGTCTGTACCAATTCTATGTACCCACCAATTCATCAGTGTCACAATGGGCACACCCTATGTTCAACATGTAAGACAAGGGTGCACAACCGATGTCCCACATGCAGACAAGAGCTTGGGGATATTAGATGTTTGGCTCTGGAGAAGGTGTTTCATTGTTTCGGGCAATACTTCTGCCTTCATTTTGAAGCTTTCCAGCTTGGGATGGCCCCTGTTTACATGGCATTCCTTCGTTTCATGGGAGACGAGAATGAGGCTCGAAACTATAGCTATAGCCTAGAAGTTGGGGCAAATGGCAGGAAACTGATTTGGGAGGGTACTCCAAGAAGTGTCCGGGATAGCCATCGCAAAGTCAGGGATAGCCATGATGGTCTTATCATCCAACGAAATATGGCCCTTTTTTTCTCTGGTGGGGATAGGAAGGAGCTTAAGCTCAGAGTTACTGGAAGAATATGGAAAGAGCAACAGAATCCAGATGCTGGGGTGTGCATACCAAATCTTTGTAGTTGA 762 0.4751 MILITGYFIYPSLVGGFGDWMDLDNIECVSSSDGIDEDEIHHHGIHPHSHHHSEFSSSKTRNGAISMGPTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDAGVCIPNLCS 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2092g00010 253 SUPERFAMILY RING/U-box 77 123 - -
Pral2092g00010 253 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 63 137 - -
Pral2092g00010 253 CDD RING-HC_SIAHs 82 120 - -
Pral2092g00010 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 126 IPR013083 -
Pral2092g00010 253 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 127 232 IPR008974 GO:0005515
Pral2092g00010 253 SUPERFAMILY TRAF domain-like 105 236 - -
Pral2092g00010 253 MobiDBLite consensus disorder prediction 39 57 - -
Pral2092g00010 253 Pfam Seven in absentia protein family 133 232 IPR018121 GO:0005737|GO:0006511|GO:0007275
Pral2092g00010 253 MobiDBLite consensus disorder prediction 39 61 - -
Pral2092g00010 253 ProSiteProfiles Zinc finger RING-type profile. 84 120 IPR001841 -
Pral2092g00010 253 FunFam E3 ubiquitin-protein ligase SINAT5-like 106 232 - -
Pral2092g00010 253 FunFam E3 ubiquitin-protein ligase SINAT3 31 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2092g00010 Pral-Chr2092 34749 38789 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2092g00010 134 239 C3H Transcription Factor Family AT2G41980 81.132 2.74e-60 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2092g00010 K04506 - qsa:O6P43_019940 367.851