Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2090g00023 ATGCCATTCAGAGATTTTGTTCGTGAGCTCAGGGAAATTCGAGATGGCATGGGTAGTATATCAAGACGAGGGATGGATGCCAAGCGTAATTATTGCCGTGGAAAATCTCTTATTGCACCTGAACTGTCCTCACCGGCATCATCATCTTTGTTAGTGACTGAGCAGAGTCGCTGGGCTAACTTACCACCTGAGTTGTTATTAGATATAATTCAAAGGGTGGAAGCAAGTGAAACTTCCTGGCCTGCCCGGAGGGCGGTTGTAGCCTGTGCGTCAGCTTGTAGATCATGGAGAAGAATAACAGAGGAGGTGGTAAAGACACCAGAACAGTGTGGGTGGCTTACCTTTCCCATATCGCTGAGGCAGCCTGGTCCAAGAGAGACTCCAATGCAGTGTTTTATAAAGAGAGAACGGGCGACTTCAAAATATCATTTATATCTTGGTTTGAGCCCGGCTCTCTCTGGTGATATGAGCAAACTGCTACTGGCAGCAAAGAAGATTAGACGGGCAACAAGTACAGAATTTTTGATATCCTTGGTTGCAGATGATTTTTCTAAAGCAAACAATACCTATGTTGGAAAGCTGAGGTCTAATTTTCTAGGCACCAAGTTCACGATCTTGGATAGTCAGTTTCCTCCCGACTCTTCCCTTCCATTGAATAGTAAATTGCAGCCAAGAATCCATTCAAAGCAGGTTTTTCCAAGGGCTGCTACAGCAGCAAAGAGTAATGTGGCCACCATATCTTATGAGCTCAATGTTCTCCGCACAAGAGGCCCAAGGAGAATGCGGTGTACGATGCACTCAATTCCTGTATCTTCCATCCAAGAAGGGGGCACTGCTCCCACTCCTGTGAAGTTTAATAATGACCTTGATGAGCATTTATGTACCGTGCACATGTCAAAAGGGGAAAAGCCAGGACCTGAGAATGAGTCCAATAGTGACGACAAGTCCCCAGAATCGAACTGCGTTGCAGGGGAGCCACTGGTTTTGAAAAATAAAGCTCCTAGATGGCATGAACAACTGCAGTGTTGGTGCTTGAATTTCAAGGGACGTGTTACAGTGGCCTCTGTGAAGAACTTCCAGCTTGTAGCAGCCGCAGAACCTTGGCAAAATATTTCAGCGGCAGAACAGGATAGAGTGATACTACAATTTGGGAAGATTGGAAAGGACATTTTCACTATGGATTACCGTTACCCCCTCTCTGCTTTTCAGGCCTTTGCAATCTGCTTGAGCAGCTTTGATACGAAACCTGCTTGCGAGTGA 1260 0.4587 MPFRDFVRELREIRDGMGSISRRGMDAKRNYCRGKSLIAPELSSPASSSLLVTEQSRWANLPPELLLDIIQRVEASETSWPARRAVVACASACRSWRRITEEVVKTPEQCGWLTFPISLRQPGPRETPMQCFIKRERATSKYHLYLGLSPALSGDMSKLLLAAKKIRRATSTEFLISLVADDFSKANNTYVGKLRSNFLGTKFTILDSQFPPDSSLPLNSKLQPRIHSKQVFPRAATAAKSNVATISYELNVLRTRGPRRMRCTMHSIPVSSIQEGGTAPTPVKFNNDLDEHLCTVHMSKGEKPGPENESNSDDKSPESNCVAGEPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPWQNISAAEQDRVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2090g00023 419 CDD F-box_AtTLP-like 58 102 - -
Pral2090g00023 419 Pfam Tub family 119 414 IPR000007 -
Pral2090g00023 419 SUPERFAMILY F-box domain 54 101 IPR036047 GO:0005515
Pral2090g00023 419 SUPERFAMILY Tubby C-terminal domain-like 107 419 IPR025659 -
Pral2090g00023 419 Pfam F-box domain 58 103 IPR001810 GO:0005515
Pral2090g00023 419 Gene3D - 53 104 - -
Pral2090g00023 419 MobiDBLite consensus disorder prediction 298 320 - -
Pral2090g00023 419 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Pral2090g00023 419 PANTHER TUBBY-RELATED 48 417 - -
Pral2090g00023 419 Gene3D Tubby Protein; Chain A 117 419 IPR025659 -
Pral2090g00023 419 PRINTS Tubby superfamily signature 376 395 IPR000007 -
Pral2090g00023 419 PRINTS Tubby superfamily signature 174 190 IPR000007 -
Pral2090g00023 419 PRINTS Tubby superfamily signature 397 419 IPR000007 -
Pral2090g00023 419 PRINTS Tubby superfamily signature 190 214 IPR000007 -
Pral2090g00023 419 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Pral2090g00023 419 PRINTS Tubby superfamily signature 240 267 IPR000007 -
Pral2090g00023 419 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Pral2090g00023 419 ProSitePatterns Tub family signature 2. 404 419 IPR018066 -
Pral2090g00023 419 MobiDBLite consensus disorder prediction 298 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2090g00023 Pral-Chr2090 191692 195545 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2090g00023 33 419 TUB Transcription Factor Family AT1G47270 64.122 1.67e-167 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pral2090g00023 Tub 4e-104 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2090g00023 K19600 - zju:107420271 614.764