Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2085g00003 ATGAAGGAGATTTTCATTTCCCTGATTCTACTGTTTGTGGGTATCGCTGCTTTGGTGTTGATCCATGTGTGCGTCGTGGGAAGGGCTCTGCGAAGAGGAAGTCATCAGGGTGGGAATGACGAACAGAGCGATGGCGATTTTGATGGAATTGGGACGAAGAGAATGTCAAGTGAGGAGATGAAGGATCTGCCCTGTTTTGAGTACAAGGAAGCAGAGAAAGGAAAGGGAGTTAGTAGCAGCACTGTGAGTGTGGATTGTGCAGTTTGCTTAGAGAGCTTCAAGGACGGTGATATTTGCAGGTTCTTGCCTAATTGCTCCCACAGCTTCCATGTCTCCTGCATAGATTCCTGGATTCTCAAAACACCCATTTGTCCCATTTGCAGAACCTGGCTTCATTCGCCCCTCGTTCCCAAGCTTGATGTTTCACAGAATGGGGAAATTGAGATTGTATAG 453 0.4702 MKEIFISLILLFVGIAALVLIHVCVVGRALRRGSHQGGNDEQSDGDFDGIGTKRMSSEEMKDLPCFEYKEAEKGKGVSSSTVSVDCAVCLESFKDGDICRFLPNCSHSFHVSCIDSWILKTPICPICRTWLHSPLVPKLDVSQNGEIEIV 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2085g00003 150 SMART ring_2 86 127 IPR001841 -
Pral2085g00003 150 Pfam Ring finger domain 85 128 IPR001841 -
Pral2085g00003 150 ProSiteProfiles Zinc finger RING-type profile. 86 128 IPR001841 -
Pral2085g00003 150 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 5 134 - -
Pral2085g00003 150 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 134 IPR013083 -
Pral2085g00003 150 MobiDBLite consensus disorder prediction 34 55 - -
Pral2085g00003 150 MobiDBLite consensus disorder prediction 33 55 - -
Pral2085g00003 150 SUPERFAMILY RING/U-box 59 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2085g00003 Pral-Chr2085 13966 14418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2085g00003 40 129 C3H Transcription Factor Family AT2G18670 38.889 7.41e-17 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2085g00003 - - cave:132176106 167.933