Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2081g00001 ATGTCTATCTTGGACGTGGACATGCACAAAGCTTCAGGGTGTGAAGGCAGCGGCATGGACATGATGTCGATGATGATGCAAATGGAGAAGTTTCCAGCTGATCAGTTCTGTGATCCTTTCTTTAACAATCCCACCGATTACCCTGAAGCTGATGAGTCCGGTAATATTGCTGCCACTACTCTCCCTTCAATCCTCAACCCTAACGAGGCTCCTGATTTCATCAACACTCCAATTATTCAACAACCCATGGCACCGTCATCATTTCTTCAACCTCAATCCGACGGTGTTCCTCCGACGAGGCTCAGAAATAAATATAGTACCAACACACCATGTACTTTCCCCTGCGCTTCAGACAAGAGGAATTCAATGGCGGCCATGAGGGAAATGATATTCAGGATAGCGGTGATGCAGCCCATTCATATAGACCCAGAATCAGTGAAGCCACCGAAGCGGAGGAATGTGAAGATTTCGAAGGACCCTCAGAGCGTGGCGGCGAGGCACAGAAGGGAAAGGATAAGCGAGAGGATCAGAATTCTGCAGAGATTAGTTCCCGGCGGGACGAAAATGGACACGGCTTCTATGCTGGACGAAGCAATACATTACGTGAAGTTCTTAAAGAAACAAGTGCAAACTCTGGAACAAGTAGGGGCTAGTAGGCCCATTGGTGTTCCTTTTTCTGGCGCCTCAAGTACTGTCAATGTCAATTATCCTGATTTCATCAAGGGACGTCATCCAGCTTCTCCAATGGTGGGTTCTATGGAAATGCTGAGTTGA 774 0.4755 MSILDVDMHKASGCEGSGMDMMSMMMQMEKFPADQFCDPFFNNPTDYPEADESGNIAATTLPSILNPNEAPDFINTPIIQQPMAPSSFLQPQSDGVPPTRLRNKYSTNTPCTFPCASDKRNSMAAMREMIFRIAVMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQVGASRPIGVPFSGASSTVNVNYPDFIKGRHPASPMVGSMEMLS 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2081g00001 257 Pfam Helix-loop-helix DNA-binding domain 166 205 IPR011598 GO:0046983
Pral2081g00001 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 205 IPR011598 GO:0046983
Pral2081g00001 257 Gene3D - 155 219 IPR036638 GO:0046983
Pral2081g00001 257 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 31 229 IPR045843 GO:0003700|GO:0006355
Pral2081g00001 257 SMART finulus 162 211 IPR011598 GO:0046983
Pral2081g00001 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 216 IPR036638 GO:0046983
Pral2081g00001 257 CDD bHLH_AtIND_like 157 213 - -
Pral2081g00001 257 FunFam BHLH transcription factor 159 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2081g00001 Pral-Chr2081 1134 2058 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2081g00001 106 214 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 85.321 1.19e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral2081g00001 HLH 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2081g00001 - - qsa:O6P43_033826 257.299