Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2079g00007 ATGGCCGATGAGCAGCCTTCAACGACTTCCAGACGAAGGGGAAAAGGTGCCGAGGCATCGGCGCGTTCCGAAGCTTTGGAACGTCTAAAAGCCCGACTTCGTGGCGGTCGCCGTTCAGACACCGATGGATATCAGATTAAGCTGGATAACCCGATTTATGATACTGTCGCCGAGGACGAGTACAATGCACTGGTCGCCAAGCGCCGCGAAGAAGCCAGAGGCTTCATTGTGGACGATGACGGTCTTGGGTACGGGGACGAAGGGGAGGAGGAGGATTGGTCAAAAGCTGGGTTCTCTCTGTCTTCCGATGAATCCGGTGGCGAAACTGAAAAGCCCAAAAGGAAGAGACAAGAAAAGAAAGATCCGCAACCTAAAAGGCCATCGTCTTCGCTATCGGCTGCGGCGGCGATGATAGGAGCGCAGAGGTTGTCATCGATGTTCACTTCGTCGGTTTTTAAGAAAAGCAGGGATGATAAGACTAAAGGACTTTCTTGTGATAGTATTGTTGATGATGTCATCGCAGAGTTCGCCCCGGATGAGACTGACAGATTAAGGCGTAGACGCGGGCCAACAAATCCTTCAAGTGCCAACAATGCTCTGCCGGTTGACAATATTAAGAGAGAGGAATCAGCGATTGGATGTCATGATCCGACGAGAGATCTTTTGTCGTCGGATGCTGTCGCAAATGGCAATTATGAATCTACTGGAGTTGTGAAAAATGATGGTTTTGCCTTGGGTTCTGAACAAAATTACGGAGGAGTCAAAGTAGAGGCAACTACTAAAGAATCAGAAGATGGGAGAAATATTGATTCCGACGATGGTCTGGCATCAGCCATGCAAACCCATAGTGGTCCAACCAACGGAGACGTGACTGAAGAAAAAATGTTAAAGGGTGTCGAGATAGAAGCCAAACAAACAGTGGAGAAGGAGGTATTTCTTCTGAATGCGAAGGTTAAAGAAGAAGACCCTGCACTGAGTGCGACTATAGGTTGGCAGGCAGCAAAGAGCGGGGGGGATGTGAATGTTGTTGATTCAAAGGTGGCCGACGAAGTTTTAAATAATGAAGAAAACTTAGAGTTCAATCTGGAGGCTGATGGGTCGCTGCCGTTCTACATACTTGATGCTCATGAGGAATTCTATGGAGCTAACATGGGTACACTGTATTTGTTCGGGAAGGTCAAATCAGGTAGTTCGTATCAAAGTTGCTGTGTTGTTGTAAAGAACATGCAGAGGTGTGTCTATGCAATTCCAAGTCGTACTTTACATCACACTGGTGAAATGATGGCACTCGAGAAGGATGTTGAAGAGTCTCGGATTTCTCGCACAGACTTTCAAAAAAAGCTGCAAGATATGGTGTCCGGTTTAAAGAATGAGATAGCAAAGCAGCTGTTAAATCTGAATGCTTCAACCTTTAGCATGAAACCTGTTAAGAGGAAGTATGCATTTGAACGTTCTGAAATACCTGCTGGTGAAAATTATGTGCTGAAAATAAATTATCCATTCAAGGACCCACCTCTTCCAGCAGATCTGAAAGGAGAGGGTTTCTGTGCTCTTCTAGGAACTCATTGCAGTGCGTTGGAGCTTTTCTTAATTAAAAGAGAGATAAAGGGGCCCTCATGGCTACTGGTTTCAAACTTTTCTTCCCGGCCTGCTTCTCAAAGGGTTAGCTGGTGCAAATTTGAAGTGATTGTTGACTCTCCTAAAGACATAAGGATTTCAACTTCCTCCAAATCCAGTTTTGAGATTCCTCCCGTGGTTGTCACAGCTATAAATTTGAAAACCATCATAAATGAAAAGCAAAACTTAAATGAGATTGTCTCTGCATCCGTTGTTTGCTGCCGCAGGGTCAAGATTGACACTCCCATGTTGGCTTCGGAATGGAAGAGACCTGGATTACTGACCCATTTTACCGTTGTCCGTAAGCTTGATGGAGGCATATTTCCACTGGGATTCAACAAGGAAGTTACAGACCGAAACGCTAAAGCTGGCTCAAATGTTCTGTGTGTTGAGAGCAGTGAAAGGGCTTTACTAAACCGCCTGATGATAGAATTGCACAAGTTGGATAGTGATGTTCTTGTTGGACATAACATTTCTGGATTTGACCTGGATGTTCTTCTTCACAGATGTCAGGCTTCTAAAGTGCCAAGCAGCATGTGGTCCAAAACAGGCCGCCTTAAACGGTCTGTGATGCCTAAACTTACCAGAGTAAGCACTGTTTTTGGGTCTGGAGCTACTCCTGGCATCTTGTCATGCATTGCTGGTCGGCTTCTTTGTGATACATACTTGTGTGCTCGTGACCTTTTAAAGGAGGTTAGCTACTCTTTATCTCAACTATCAAAAACTCAGCTGAATAAAGTTCGAAAAGAGGTTGCTCCACATGATGTTCCAAAAATGTTCCAATCAGCAGAATCCCTTGTGGAACTTATTGAGTATGGCGAGACAGATGCATGGTTATCTATGGAACTCATGTTTCATTTGAGTGTTCTCCCCCTCACACGTCAGCTGACTAATATTAGTGGTAACTTGTGGGGAAAAACACTTCAGGGTGCGAGGGCACAGAGAGTCGAGTATCTGTTGTTGCATGCTTTCCATGCAAAGAAATATATCGTGCCAGACAAGATTCCTTCCCATACCAAAGAAACAAAATTGACAAAACGCAGAGGAACTCATGGCGTTGAGGATGCTGGCTTTGACGAAGTTATTGACAATAAAAACTATGACAATGATGCTCCTGACAGTGATCATGGTAAAAGCAAGAGGACTCCGTCCTACGCTGGAGGACTGGTTTTGGAGCCTAAAAGGGGTTTATATGACAAATATATATTGCTTTTGGACTTCAATAGTCTTTATCCTTCTATAATTCAGGAATACAATATCTGCTTCACAACTGTTGAAAGATCTACAGATGGATCTTTTCCTCGTCTGCCATCTAGTAAAACATCTGGAGTTTTGCCAGAGTTGCTGAAAAATCTGGTTCAAAGGAGGAGAATGGTGAAGTCATGGATGAAAACTGCTTCTGGTCTTAAAGTTCAGCAACTGGACGTTCAGCAACAAGCACTTAAGCTTACTGCAAACAGTATGTACGGATGCCTTGGATTTGCTAATTCAAGATTTTATGCAAAACCGCTGGCTGAGCTTATAACCCTGCAAGGAAGGGAGATACTACAAAGTACTGTTGATCTTGTTCAGAATAACCTGAACTTAGAGGTGATCTATGGCGACACTGATTCAATCATGATTTACAGTGGACTAGATGATATTGCGAAAGCAAAAGCAATGGCTGGAAAAGTGATTCAAGAGGTTAACAAGAAATATAGGTGCTTGGAAATTGATCTTGATGGTCTGTACAAGAGAATGCTACTGCTTAAGAAAAAGAAATATGCAGCTGTCAAGGTGCAGTTCAAAGATGGCACGCCATATGAGGTTATTGAACGTAAAGGTCTGGATATTGTTCGTCGTGATTGGAGCCTATTATCTAAAGAAATAGGAGATTTTTGCCTAGGTCAAATTTTGTCAGGAGGGTCATGTGAGGATGTTGTCGAATCAATTCACAGCTCTCTTTATAAGGTGCAAGAAGAGATGAGGAGTGGACAAGTGCCGTTAGAGAAATATATCATCACTAAGACATTGACTAAACCTCCTGAAGCCTATCCAGATGCCAAAAATCAACCGCATGTTCTTGTGGCACAGAGATTGAAGCAAAAGGGCTACTCCACTGGGTGCTCTGTCGGTGATGCAATCCCCTACATTATTTGCTATGAGCAGGGCAGTAATTCAAGCAGTGGAACAAGTGTTGCTCAACGTGCCAGACATCCTGAGGAACTAAAACAAGAACAAGGGAATTGGATGATTGATATTGATTATTACCTGTCACAACAGCTTCATCCCGTTGTTTCACGTCTCTGTGCATCAATTCAGGGAACGAGTCCAGAAAGACTGGCTGATTGTTTAGGGCTTGATGCATCAAAATTTCAACACAAGTCAAGTGAAGCCTTCAATGGTTATCCCTCAAATTCACTCTTGTTTGCTGCTGATGACAAAGAGAGGTATCAAGGGTGTCAGCCGTTAGTTTTGTCATGTCCTAGCTGCTCTGATACTTTTGACTGTCCTCCTATCTCTAAATCTGTCTGCGGAAGCGAAAAGCCGACAAGCTCAGGCATGGAGGAATCAGGCTATAATTTCTGGCGTAAGCTGCGCTGTCCTAAATGTCCAGAAGAAGATGGTGTCGGCAGACTTTCTCCGGCAATGATTGCCAATCAGGTCAAAAGGCAAGCAGATAAGTTCATTTCAATGTACTACAGAGGCTTGTTAATGTGCGACGACGAAACCTGTAAGTATTCGACACGAAGTATCAACCTCCGGCTGGTTGGTGATTCTGAAAGAGGAACAGTTTGTCCAAATTATCCTCGCTGCAATGGGCGTCTTCTAAGACAGTACACGGAGGCAGACTTGTATAAACAGCTCTCGTATTTTTGCCATGTGCTGGATACTGTTTCCTGGATAGAAAAGATGGAGGTTAAATCTAGGATACCACTTGAGAAAGAGTTGTCGAAAATTAGGCCAATGATTGATCTGGCAGCATCAACGATACAGGAGATTCGGGATCGGTGCGCCTTTGGGTGGGTACAGATGCAGGACTTGGTCATCACTGTATGA 4656 0.4396 MADEQPSTTSRRRGKGAEASARSEALERLKARLRGGRRSDTDGYQIKLDNPIYDTVAEDEYNALVAKRREEARGFIVDDDGLGYGDEGEEEDWSKAGFSLSSDESGGETEKPKRKRQEKKDPQPKRPSSSLSAAAAMIGAQRLSSMFTSSVFKKSRDDKTKGLSCDSIVDDVIAEFAPDETDRLRRRRGPTNPSSANNALPVDNIKREESAIGCHDPTRDLLSSDAVANGNYESTGVVKNDGFALGSEQNYGGVKVEATTKESEDGRNIDSDDGLASAMQTHSGPTNGDVTEEKMLKGVEIEAKQTVEKEVFLLNAKVKEEDPALSATIGWQAAKSGGDVNVVDSKVADEVLNNEENLEFNLEADGSLPFYILDAHEEFYGANMGTLYLFGKVKSGSSYQSCCVVVKNMQRCVYAIPSRTLHHTGEMMALEKDVEESRISRTDFQKKLQDMVSGLKNEIAKQLLNLNASTFSMKPVKRKYAFERSEIPAGENYVLKINYPFKDPPLPADLKGEGFCALLGTHCSALELFLIKREIKGPSWLLVSNFSSRPASQRVSWCKFEVIVDSPKDIRISTSSKSSFEIPPVVVTAINLKTIINEKQNLNEIVSASVVCCRRVKIDTPMLASEWKRPGLLTHFTVVRKLDGGIFPLGFNKEVTDRNAKAGSNVLCVESSERALLNRLMIELHKLDSDVLVGHNISGFDLDVLLHRCQASKVPSSMWSKTGRLKRSVMPKLTRVSTVFGSGATPGILSCIAGRLLCDTYLCARDLLKEVSYSLSQLSKTQLNKVRKEVAPHDVPKMFQSAESLVELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKIPSHTKETKLTKRRGTHGVEDAGFDEVIDNKNYDNDAPDSDHGKSKRTPSYAGGLVLEPKRGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSTDGSFPRLPSSKTSGVLPELLKNLVQRRRMVKSWMKTASGLKVQQLDVQQQALKLTANSMYGCLGFANSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIAKAKAMAGKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGTPYEVIERKGLDIVRRDWSLLSKEIGDFCLGQILSGGSCEDVVESIHSSLYKVQEEMRSGQVPLEKYIITKTLTKPPEAYPDAKNQPHVLVAQRLKQKGYSTGCSVGDAIPYIICYEQGSNSSSGTSVAQRARHPEELKQEQGNWMIDIDYYLSQQLHPVVSRLCASIQGTSPERLADCLGLDASKFQHKSSEAFNGYPSNSLLFAADDKERYQGCQPLVLSCPSCSDTFDCPPISKSVCGSEKPTSSGMEESGYNFWRKLRCPKCPEEDGVGRLSPAMIANQVKRQADKFISMYYRGLLMCDDETCKYSTRSINLRLVGDSERGTVCPNYPRCNGRLLRQYTEADLYKQLSYFCHVLDTVSWIEKMEVKSRIPLEKELSKIRPMIDLAASTIQEIRDRCAFGWVQMQDLVITV 1551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2079g00007 1551 Gene3D DNA Polymerase alpha, zinc finger 1343 1536 IPR038256 -
Pral2079g00007 1551 Pfam DNA polymerase alpha subunit p180 N terminal 26 93 IPR024647 -
Pral2079g00007 1551 SMART polmehr3 583 1084 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pral2079g00007 1551 FunFam DNA polymerase 1343 1537 - -
Pral2079g00007 1551 Pfam DNA polymerase family B, exonuclease domain 399 777 IPR006133 -
Pral2079g00007 1551 Gene3D - 370 569 - -
Pral2079g00007 1551 MobiDBLite consensus disorder prediction 902 919 - -
Pral2079g00007 1551 CDD POLBc_alpha 917 1320 IPR045846 GO:0003887|GO:1902975
Pral2079g00007 1551 MobiDBLite consensus disorder prediction 902 924 - -
Pral2079g00007 1551 MobiDBLite consensus disorder prediction 76 133 - -
Pral2079g00007 1551 Pfam DNA Polymerase alpha zinc finger 1344 1547 IPR015088 GO:0003887|GO:0006260
Pral2079g00007 1551 MobiDBLite consensus disorder prediction 1 24 - -
Pral2079g00007 1551 NCBIfam DNA polymerase (pol2) 52 1302 - -
Pral2079g00007 1551 Gene3D - 1148 1333 IPR042087 -
Pral2079g00007 1551 FunFam DNA polymerase 583 897 - -
Pral2079g00007 1551 Pfam DNA polymerase family B 842 1304 IPR006134 GO:0000166|GO:0003677
Pral2079g00007 1551 SUPERFAMILY DNA/RNA polymerases 867 1319 IPR043502 -
Pral2079g00007 1551 SUPERFAMILY Ribonuclease H-like 365 871 IPR012337 -
Pral2079g00007 1551 MobiDBLite consensus disorder prediction 274 288 - -
Pral2079g00007 1551 MobiDBLite consensus disorder prediction 260 290 - -
Pral2079g00007 1551 Gene3D - 410 536 - -
Pral2079g00007 1551 Gene3D - 583 895 IPR036397 GO:0003676
Pral2079g00007 1551 Gene3D Palm domain of DNA polymerase 910 1135 IPR023211 -
Pral2079g00007 1551 Coils Coil 1098 1118 - -
Pral2079g00007 1551 FunFam DNA polymerase 982 1031 - -
Pral2079g00007 1551 FunFam DNA polymerase 1148 1334 - -
Pral2079g00007 1551 MobiDBLite consensus disorder prediction 106 125 - -
Pral2079g00007 1551 CDD DNA_polB_alpha_exo 583 834 - -
Pral2079g00007 1551 Gene3D Helix hairpin bin 980 1031 - -
Pral2079g00007 1551 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 18 1549 - -
Pral2079g00007 1551 FunFam DNA polymerase 410 536 - -
Pral2079g00007 1551 PRINTS DNA-directed DNA-polymerase family B signature 1017 1029 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pral2079g00007 1551 PRINTS DNA-directed DNA-polymerase family B signature 1070 1078 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pral2079g00007 1551 PRINTS DNA-directed DNA-polymerase family B signature 941 954 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pral2079g00007 1551 ProSitePatterns DNA polymerase family B signature. 1072 1080 IPR017964 GO:0000166|GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2079g00007 Pral-Chr2079 37287 49591 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2079g00007 1 1549 Core DNA Replication Machinery Family AT5G67100 60.648 0.0 1872
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2079g00007 K02320 - zju:107424534 2289.23