Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2079g00006 ATGGCCGATGAGCAGCCTTCAACGACTTCCAGACGAAGGGGAAAAGGTGCCGAGGCATCGGCGCGTTCCGAAGCTTTGGAACACACCGATGGATATCAGATTAAGCTGGATAACCCGATTTATGATACTGTCGCCGAGGACGAGTACAATGCACTGGTCGCCAAGCGCCGCGAAGAAGCCAGAGGCTTCATTGTGGACGATGACGGTCTTGGGTACGGGGACGAAGGGGAGGAGGAGGATTGGTCAAAAGCTGGGTTCTCTCTGTCTTCCGATGAATCCGGTGGCGAAACTGAAAAGCCCAAAAGGAAGAGACAAGAAAAGAAAGATCCGCAACCTAAAAGGCCATCGTCTTCGCTATCGGCTGCGGCGGCGATGATAGGAGCGCAGAGGTTGTCATCGATGTTCACTTCGTCGGTTTTTAAGAAAAGCAGGGATGATAAGACTAAAGGACTTTCTTGTGATAGTATTGTTGATGATGTCATCGCAGAGTTCGCCCCGGATGAGACTGACAGATTAAGGCGTAGACGCGGGCCAACAAATCCTTCAAGTGCCAACAATGCTCTGCCGGTTGACAATATTAAGAGAGAGGAATCAGCGATTGGATGTCATGATCCGACGAGAGATCTTTTGTCGTCGGATGCTGTCGCAAATGGCAATTATGAATCTACTGGAGTTGTGAAAAATGATGGTTTTGCCTTGGGTTCTGAACAAAATTACGGAGGAGTCAAAGTAGAGGCAACTACTAAAGAATCAGAAGATGGGAGAAATATTGATTCCGACGATGGTCTGGCATCAGCCATGCAAACCCATAGTGGTCCAACCAACGGAGACGTGACTGAAGAAAAAATGTTAAAGGGTGTCGAGATAGAAGCCAAACAAACAGTGGAGAAGGAGGTATTTCTTCTGAATGCGAAGGTTAAAGAAGAAGACCCTGCACTGAGTGCGACTATAGGTTGGCAGGCAGCAAAGAGCGGGGGGGATGTGAATGTTGTTGATTCAAAGGTGGCCGACGAAGTTTTAAATAATGAAGAAAACTTAGAGTTCAATCTGGAGGCTGATGGGTCGCTGCCGTTCTACATACTTGATGCTCATGAGGAATTCTATGGAGCTAACATGGGTACACTGTATTTGTTCGGGAAGGTCAAATCAGGTAGTTCGTATCAAAGTTGCTGTGTTGTTGTAAAGAACATGCAGAGGTGTGTCTATGCAATTCCAAGTCGTACTTTACATCACACTGGTGAAATGATGGCACTCGAGAAGGATGTTGAAGAGTCTCGGATTTCTCGCACAGACTTTCAAAAAAAGCTGCAAGATATGGTGTCCGGTTTAAAGAATGAGATAGCAAAGCAGCTGTTAAATCTGAATGCTTCAACCTTTAGCATGAAACCTGTTAAGAGGAAGTATGCATTTGAACGTTCTGAAATACCTGCTGGTGAAAATTATGTGCTGAAAATAAATTATCCATTCAAGGACCCACCTCTTCCAGCAGATCTGAAAGGAGAGGGTTTCTGTGCTCTTCTAGGAACTCATTGCAGTGCGTTGGAGCTTTTCTTAATTAAAAGAGAGATAAAGGGGCCCTCATGGCTACTGGTTTCAAACTTTTCTTCCCGGCCTGCTTCTCAAAGGGTTAGCTGGTGCAAATTTGAAGTGATTGTTGACTCTCCTAAAGACATAAGGATTTCAACTTCCTCCAAATCCAGTTTTGAGATTCCTCCCGTGGTTGTCACAGCTATAAATTTGAAAACCATCATAAATGAAAAGCAAAACTTAAATGAGATTGTCTCTGCATCCGTTGTTTGCTGCCGCAGGGTCAAGATTGACACTCCCATGTTGGCTTCGGAATGGAAGAGACCTGGATTACTGACCCATTTTACCGTTGTCCGTAAGCTTGATGGAGGCATATTTCCACTGGGATTCAACAAGGAAGTTACAGACCGAAACGCTAAAGCTGGCTCAAATGTTCTGTGTGTTGAGAGCAGTGAAAGGGCTTTACTAAACCGCCTGATGATAGAATTGCACAAGTTGGATAGTGATGTTCTTGTTGGACATAACATTTCTGGATTTGACCTGGATGTTCTTCTTCACAGATGTCAGGCTTCTAAAGTGCCAAGCAGCATGTGGTCCAAAACAGGCCGCCTTAAACGGTCTGTGATGCCTAAACTTACCAGAGTAAGCACTGTTTTTGGGTCTGGAGCTACTCCTGGCATCTTGTCATGCATTGCTGGTCGGCTTCTTTGTGATACATACTTGTGTGCTCGTGACCTTTTAAAGGAGGTTAGCTACTCTTTATCTCAACTATCAAAAACTCAGCTGAATAAAGTTCGAAAAGAGGTTGCTCCACATGATGTTCCAAAAATGTTCCAATCAGCAGAATCCCTTGTGGAACTTATTGAGTATGGCGAGACAGATGCATGGTTATCTATGGAACTCATGTTTCATTTGAGTGTTCTCCCCCTCACACGTCAGCTGACTAATATTAGTGGTAACTTGTGGGGAAAAACACTTCAGGGTGCGAGGGCACAGAGAGTCGAGTATCTGTTGTTGCATGCTTTCCATGCAAAGAAATATATCGTGCCAGACAAGATTCCTTCCCATACCAAAGAAACAAAATTGACAAAACGCAGAGGAACTCATGGCGTTGAGGATGCTGGCTTTGACGAAGTTATTGACAATAAAAACTATGACAATGATGCTCCTGACAGTGATCATGGTAAAAGCAAGAGGACTCCGTCCTACGCTGGAGGACTGGTTTTGGAGCCTAAAAGGGGTTTATATGACAAATATATATTGCTTTTGGACTTCAATAGTCTTTATCCTTCTATAATTCAGGAATACAATATCTGCTTCACAACTGTTGAAAGATCTACAGATGGATCTTTTCCTCGTCTGCCATCTAGTAAAACATCTGGAGTTTTGCCAGAGTTGCTGAAAAATCTGGTTCAAAGGAGGAGAATGGTGAAGTCATGGATGAAAACTGCTTCTGGTCTTAAAGTTCAGCAACTGGACGTTCAGCAACAAGCACTTAAGCTTACTGCAAACAGTATGTACGGATGCCTTGGATTTGCTAATTCAAGATTTTATGCAAAACCGCTGGCTGAGCTTATAACCCTGCAAGGAAGGGAGATACTACAAAGTACTGTTGATCTTGTTCAGAATAACCTGAACTTAGAGGTGATCTATGGCGACACTGATTCAATCATGATTTACAGTGGACTAGATGATATTGCGAAAGCAAAAGCAATGGCTGGAAAAGTGATTCAAGAGGTTAACAAGAAATATAGGTGCTTGGAAATTGATCTTGATGGTCTGTACAAGAGAATGCTACTGCTTAAGAAAAAGAAATATGCAGCTGTCAAGGTGCAGTTCAAAGATGGCACGCCATATGAGGTTATTGAACGTAAAGGTCTGGATATTGTTCGTCGTGATTGGAGCCTATTATCTAAAGAAATAGGAGATTTTTGCCTAGGTCAAATTTTGTCAGGAGGGTCATGTGAGGATGTTGTCGAATCAATTCACAGCTCTCTTTATAAGGTGCAAGAAGAGATGAGGAGTGGACAAGTGCCGTTAGAGAAATATATCATCACTAAGACATTGACTAAACCTCCTGAAGCCTATCCAGATGCCAAAAATCAACCGCATGTTCTTGTGGCACAGAGATTGAAGCAAAAGGGCTACTCCACTGGGTGCTCTGTCGGTGATGCAATCCCCTACATTATTTGCTATGAGCAGGGCAGTAATTCAAGCAGTGGAACAAGTGTTGCTCAACGTGCCAGACATCCTGAGGAACTAAAACAAGAACAAGGGAATTGGATGATTGATATTGATTATTACCTGTCACAACAGCTTCATCCCGTTGTTTCACGTCTCTGTGCATCAATTCAGGGAACGAGTCCAGAAAGACTGGCTGATTGTTTAGGGCTTGATGCATCAAAATTTCAACACAAGTCAAGTGAAGCCTTCAATGGTTATCCCTCAAATTCACTCTTGTTTGCTGCTGATGACAAAGAGAGGTATCAAGGGTGTCAGCCGTTAGTTTTGTCATGTCCTAGCTGCTCTGATACTTTTGACTGTCCTCCTATCTCTAAATCTGTCTGCGGAAGCGAAAAGCCGACAAGCTCAGGCATGGAGGAATCAGGCTATAATTTCTGGCGTAAGCTGCGCTGTCCTAAATGTCCAGAAGAAGATGGTGTCGGCAGACTTTCTCCGGCAATGATTGCCAATCAGGTCAAAAGGCAAGCAGATAAGTTCATTTCAATGTACTACAGAGGCTTGTTAATGTGCGACGACGAAACCTGTAAGTATTCGACACGAAGTATCAACCTCCGGCTGGTTGGTGATTCTGAAAGAGGAACAGTTTGTCCAAATTATCCTCGCTGCAATGGGCGTCTTCTAAGACAGTACACGGAGGCAGACTTGTATAAACAGCTCTCGTATTTTTGCCATGTGCTGGATACTGTTTCCTGGATAGAAAAGATGGAGGTTAAATCTAGGATACCACTTGAGAAAGAGTTGTCGAAAATTAGGCCAATGATTGATCTGGCAGCATCAACGATACAGGAGATTCGGGATCGGTGCGCCTTTGGGTGGGTACAGATGCAGGACTTGGTCATCACTGTATGA 4620 0.4383 MADEQPSTTSRRRGKGAEASARSEALEHTDGYQIKLDNPIYDTVAEDEYNALVAKRREEARGFIVDDDGLGYGDEGEEEDWSKAGFSLSSDESGGETEKPKRKRQEKKDPQPKRPSSSLSAAAAMIGAQRLSSMFTSSVFKKSRDDKTKGLSCDSIVDDVIAEFAPDETDRLRRRRGPTNPSSANNALPVDNIKREESAIGCHDPTRDLLSSDAVANGNYESTGVVKNDGFALGSEQNYGGVKVEATTKESEDGRNIDSDDGLASAMQTHSGPTNGDVTEEKMLKGVEIEAKQTVEKEVFLLNAKVKEEDPALSATIGWQAAKSGGDVNVVDSKVADEVLNNEENLEFNLEADGSLPFYILDAHEEFYGANMGTLYLFGKVKSGSSYQSCCVVVKNMQRCVYAIPSRTLHHTGEMMALEKDVEESRISRTDFQKKLQDMVSGLKNEIAKQLLNLNASTFSMKPVKRKYAFERSEIPAGENYVLKINYPFKDPPLPADLKGEGFCALLGTHCSALELFLIKREIKGPSWLLVSNFSSRPASQRVSWCKFEVIVDSPKDIRISTSSKSSFEIPPVVVTAINLKTIINEKQNLNEIVSASVVCCRRVKIDTPMLASEWKRPGLLTHFTVVRKLDGGIFPLGFNKEVTDRNAKAGSNVLCVESSERALLNRLMIELHKLDSDVLVGHNISGFDLDVLLHRCQASKVPSSMWSKTGRLKRSVMPKLTRVSTVFGSGATPGILSCIAGRLLCDTYLCARDLLKEVSYSLSQLSKTQLNKVRKEVAPHDVPKMFQSAESLVELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKIPSHTKETKLTKRRGTHGVEDAGFDEVIDNKNYDNDAPDSDHGKSKRTPSYAGGLVLEPKRGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSTDGSFPRLPSSKTSGVLPELLKNLVQRRRMVKSWMKTASGLKVQQLDVQQQALKLTANSMYGCLGFANSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIAKAKAMAGKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGTPYEVIERKGLDIVRRDWSLLSKEIGDFCLGQILSGGSCEDVVESIHSSLYKVQEEMRSGQVPLEKYIITKTLTKPPEAYPDAKNQPHVLVAQRLKQKGYSTGCSVGDAIPYIICYEQGSNSSSGTSVAQRARHPEELKQEQGNWMIDIDYYLSQQLHPVVSRLCASIQGTSPERLADCLGLDASKFQHKSSEAFNGYPSNSLLFAADDKERYQGCQPLVLSCPSCSDTFDCPPISKSVCGSEKPTSSGMEESGYNFWRKLRCPKCPEEDGVGRLSPAMIANQVKRQADKFISMYYRGLLMCDDETCKYSTRSINLRLVGDSERGTVCPNYPRCNGRLLRQYTEADLYKQLSYFCHVLDTVSWIEKMEVKSRIPLEKELSKIRPMIDLAASTIQEIRDRCAFGWVQMQDLVITV 1539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2079g00006 1539 Gene3D - 1136 1321 IPR042087 -
Pral2079g00006 1539 NCBIfam DNA polymerase (pol2) 40 1290 - -
Pral2079g00006 1539 MobiDBLite consensus disorder prediction 248 278 - -
Pral2079g00006 1539 FunFam DNA polymerase 970 1019 - -
Pral2079g00006 1539 FunFam DNA polymerase 1136 1322 - -
Pral2079g00006 1539 Pfam DNA polymerase family B, exonuclease domain 387 765 IPR006133 -
Pral2079g00006 1539 MobiDBLite consensus disorder prediction 262 276 - -
Pral2079g00006 1539 Coils Coil 1086 1106 - -
Pral2079g00006 1539 Gene3D - 398 524 - -
Pral2079g00006 1539 MobiDBLite consensus disorder prediction 94 113 - -
Pral2079g00006 1539 CDD DNA_polB_alpha_exo 571 822 - -
Pral2079g00006 1539 Gene3D Palm domain of DNA polymerase 898 1123 IPR023211 -
Pral2079g00006 1539 Gene3D DNA Polymerase alpha, zinc finger 1331 1524 IPR038256 -
Pral2079g00006 1539 MobiDBLite consensus disorder prediction 1 33 - -
Pral2079g00006 1539 Gene3D - 358 557 - -
Pral2079g00006 1539 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 25 1537 - -
Pral2079g00006 1539 ProSitePatterns DNA polymerase family B signature. 1060 1068 IPR017964 GO:0000166|GO:0003676
Pral2079g00006 1539 Gene3D Helix hairpin bin 968 1019 - -
Pral2079g00006 1539 Pfam DNA Polymerase alpha zinc finger 1332 1535 IPR015088 GO:0003887|GO:0006260
Pral2079g00006 1539 SMART polmehr3 571 1072 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pral2079g00006 1539 MobiDBLite consensus disorder prediction 890 912 - -
Pral2079g00006 1539 FunFam DNA polymerase 571 885 - -
Pral2079g00006 1539 CDD POLBc_alpha 905 1308 IPR045846 GO:0003887|GO:1902975
Pral2079g00006 1539 MobiDBLite consensus disorder prediction 890 907 - -
Pral2079g00006 1539 FunFam DNA polymerase 1331 1525 - -
Pral2079g00006 1539 MobiDBLite consensus disorder prediction 63 121 - -
Pral2079g00006 1539 Gene3D - 571 883 IPR036397 GO:0003676
Pral2079g00006 1539 MobiDBLite consensus disorder prediction 1 31 - -
Pral2079g00006 1539 Pfam DNA polymerase alpha subunit p180 N terminal 21 81 IPR024647 -
Pral2079g00006 1539 PRINTS DNA-directed DNA-polymerase family B signature 1005 1017 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pral2079g00006 1539 PRINTS DNA-directed DNA-polymerase family B signature 1058 1066 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pral2079g00006 1539 PRINTS DNA-directed DNA-polymerase family B signature 929 942 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pral2079g00006 1539 SUPERFAMILY DNA/RNA polymerases 855 1307 IPR043502 -
Pral2079g00006 1539 SUPERFAMILY Ribonuclease H-like 353 859 IPR012337 -
Pral2079g00006 1539 Pfam DNA polymerase family B 830 1292 IPR006134 GO:0000166|GO:0003677
Pral2079g00006 1539 FunFam DNA polymerase 398 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2079g00006 Pral-Chr2079 37287 49591 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2079g00006 1 1537 Core DNA Replication Machinery Family AT5G67100 60.140 0.0 1856
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2079g00006 K02320 - zju:107424534 2271.12