Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2079g00005 ATGGGAGATATGTATAGCTATGATCATACCGATAATCACAATTTCCCCATGTCTTCAACCTCATCTCTTTCCTCATCTTCACCTCAAGACGAAATCTCTCTTTTACTGCATCAGATTCTCCTTCGTTCGTCATCCTCGTCAGCATCATCGTCGCTGCTTGTGACCCACACGGCTAAAAACGCCCACACCTCGACGGCTGGACTCTGCAGTTCCCAAGCCACGCTAGAGAATCCTCACCCTTCCGACCGATCATCACTTCTCCATGGTGGGATCTCCGTCGCTGATTCCTCCATTGGAGTAGGCGCTCCGAACGATGCTTTTCTTTCCTCTCCGGGGACCTGTACGTTGGCCAATATGAAGGGCAGTTCAGCTGTAGACATGCCTTCATCTCTCGGAGTAAGTGAGAATGAGTTGGACGAGTATGATTGCGAGAGTGAGGAGGGGATCGAAGCATTGGTGGAACAGCAGCCGGTAAAGTCAGTTCCTCCTCGGAGTTCATCAAAGAGAAGCAGAGCTGCGGAAGTTCATAATTTGTCTGAAAAGAGAAGGAGAAGCAGGATCAACGAAAAAATGAAGGCATTGCAAAATCTGATTCCAAATTCAAACAAGACAGACAAGGCTTCGATGCTGGATGAAGCTATTGAATACCTGAAACAACTTCAGCTCCAAGTACAGATGCTGTCAATGAGAAATGGTTTGAGTTTGCATCCCATGTGCTTTTCTGAAGACTTGCAGGCTCAGCGATTTGGTCAGATGAGGTGTGAGTTCAGTGAAGAAAACAGGTCTTTGCCTGTAAACACGGCAACTACTCTGCCTTTGACCCAAGAAAACCCCTTGCAATATGAGTCGAAATCCAGTCTACCTGACAAACTCAGCACACAGGACCAACGATTAGTGCCTCCTCCATCGTATAAAATTAACCCAGAAACTTCTTACGGGCTAGAATCCCCAGTTCTTCCGCATATAAGATCCTTTCCACAGAAAAGAACTTCCGAGATGCGTAACAATGGGATATTGCGGCAGCAGAAATTAAATGTGAGCCATTCAGATTCCAATCCTTTAGGTGGTTATCAAGTATCACACACCTTTGATATGCAAACGTCCGAGCAGAAAGACAAGGGCTTTGAAACAGCTGCGGGGAAAGATCAATTGGCATTGATCCTAAGAAATAGCGTAAACAACGTTACGATGACATCGCGGCTTCGGAGGTATAAGCGTTTCATTTCTCCAGATTACAGGCCGGAGAAAGTATATGCGAAGACGACATCAAGACAGAGAAACCTCGTTTGTGAAGCGTGCGAGGCTTTCGCTTGTTTTTGA 1320 0.4621 MGDMYSYDHTDNHNFPMSSTSSLSSSSPQDEISLLLHQILLRSSSSSASSSLLVTHTAKNAHTSTAGLCSSQATLENPHPSDRSSLLHGGISVADSSIGVGAPNDAFLSSPGTCTLANMKGSSAVDMPSSLGVSENELDEYDCESEEGIEALVEQQPVKSVPPRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMCFSEDLQAQRFGQMRCEFSEENRSLPVNTATTLPLTQENPLQYESKSSLPDKLSTQDQRLVPPPSYKINPETSYGLESPVLPHIRSFPQKRTSEMRNNGILRQQKLNVSHSDSNPLGGYQVSHTFDMQTSEQKDKGFETAAGKDQLALILRNSVNNVTMTSRLRRYKRFISPDYRPEKVYAKTTSRQRNLVCEACEAFACF 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2079g00005 439 FunFam Basic helix-loop-helix transcription factor 166 229 - -
Pral2079g00005 439 Gene3D - 166 230 IPR036638 GO:0046983
Pral2079g00005 439 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 171 220 IPR011598 GO:0046983
Pral2079g00005 439 Coils Coil 210 230 - -
Pral2079g00005 439 MobiDBLite consensus disorder prediction 1 27 - -
Pral2079g00005 439 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 231 IPR036638 GO:0046983
Pral2079g00005 439 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 23 340 IPR031066 -
Pral2079g00005 439 MobiDBLite consensus disorder prediction 169 183 - -
Pral2079g00005 439 MobiDBLite consensus disorder prediction 155 183 - -
Pral2079g00005 439 MobiDBLite consensus disorder prediction 265 304 - -
Pral2079g00005 439 MobiDBLite consensus disorder prediction 11 27 - -
Pral2079g00005 439 CDD bHLH_AtPIF_like 171 233 IPR047265 -
Pral2079g00005 439 SMART finulus 177 226 IPR011598 GO:0046983
Pral2079g00005 439 Pfam Helix-loop-helix DNA-binding domain 175 221 IPR011598 GO:0046983
Pral2079g00005 439 MobiDBLite consensus disorder prediction 265 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2079g00005 Pral-Chr2079 33322 36243 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2079g00005 136 355 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 50.000 6.21e-50 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral2079g00005 HLH 5.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2079g00005 - - pcin:129321987 506.523