LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral2077g00110	ATGGCGGTACCTGAGAATGCCGGAGCCATAATCGGTTCATCCAGTCAAAATTTGGACGACAGTGTAGTGTCATCGGACTCAACTGTGACCAATGAGCTGGAGAAATCGAAACCCAGAACCGAGGCTATTGTAAATGGTTTAGAAGCAGACGTTCAACCTGTCAACGGCGATGATCAGTGTCTGAATGATGTGTTCGGCCATCAGGATAGAGCTCCGTCGGTCCCTAACGGCAATTACAAGTCTCAAATCACTCAGATGCGAAATGGGTTCGAGGCAAATGGGGTTCAGAACCAGCAGATGGTGTTAAATAATAGCGGCTACGGAATTAAGCAAATATCTAACGGAGTAAGGAACGATGGAGAGGGTGGTGAGAGTTTCAAGCGTGATATGAGGGATTTGGAAGAGTTATTGTCAAAGCTGAATCCCATGGCCGAGGAATTTGTACCGCCATCTCTTACCGTTAATCACGGATTCTTAGGTGATGCTGGGTTTAGCTACCCTAACAACTTTCTACCCCAAACTAATTATGGCAATGCAAATGGACATACTAACAGAAGGAGGAAGAATGGATACAATCAAGGGAAGCGAAGAGCTGATAATAAAATGGATTTGGAGAAGAGAGAAGACATGATCAAGAAGACTGTTTATGTGTCTGATATTGATCAACAGGTCACTGAAGAGCAGCTGGCAGCTCTCTTTCTTAACTGTGGACAGGTTGTTGATTGCCGAGTATGCGGAGATCCTAATTCTATACTTCGTTTTGCCTTCATTGAGTTTACGGACGAAGAAGGTGCGAGGGCTGCTTTGAACCTGTCTGGCACCATGCTTGGATATTACCCAGTGAGAGTGCTGCCTTCAAAAACTGCTATCGCACCAGTTAACCCCTCATTTTTGCCCAGGTCTGAAGATGAACGGGAGATGTGCTCAAGAACAATTTATTGCACGAATATTGACAAGAAGGTCACCCAGGCAGATGTTAAACTCTTCTTTGAATCTCTTTGTGGAGAGGTTCAACGCTTGAGGCTTCTTGGAGATTACCATCACTCAACTCGCATTGCATTTGTTGAGTTCACTATGGCTGAAAGTGCAATTGCAGCTCTGAACTGTAGTGGTGTGATTTTGGGTTCGCTGCCTATCAGGGTAAGTCCATCGAAGACACCTGTTCGGTCTCGTGCACCACGTGGGTCAATGCACTGA	1197	0.4553	MAVPENAGAIIGSSSQNLDDSVVSSDSTVTNELEKSKPRTEAIVNGLEADVQPVNGDDQCLNDVFGHQDRAPSVPNGNYKSQITQMRNGFEANGVQNQQMVLNNSGYGIKQISNGVRNDGEGGESFKRDMRDLEELLSKLNPMAEEFVPPSLTVNHGFLGDAGFSYPNNFLPQTNYGNANGHTNRRRKNGYNQGKRRADNKMDLEKREDMIKKTVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEEGARAALNLSGTMLGYYPVRVLPSKTAIAPVNPSFLPRSEDEREMCSRTIYCTNIDKKVTQADVKLFFESLCGEVQRLRLLGDYHHSTRIAFVEFTMAESAIAALNCSGVILGSLPIRVSPSKTPVRSRAPRGSMH	398

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral2077g00110	398	MobiDBLite	consensus disorder prediction	1	37	-	-
	Pral2077g00110	398	FunFam	Polyadenylate-binding protein-interacting protein 10	304	382	-	-
	Pral2077g00110	398	Pfam	Ataxin-2 C-terminal region	137	151	IPR009818	-
	Pral2077g00110	398	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	213	288	IPR000504	GO:0003723
	Pral2077g00110	398	MobiDBLite	consensus disorder prediction	175	200	-	-
	Pral2077g00110	398	FunFam	Polyadenylate-binding protein-interacting protein 11	176	290	-	-
	Pral2077g00110	398	CDD	RRM1_CID8_like	211	290	IPR034823	-
	Pral2077g00110	398	Gene3D	-	173	290	IPR012677	-
	Pral2077g00110	398	Gene3D	-	296	392	IPR012677	-
	Pral2077g00110	398	PANTHER	SERINE/ARGININE-RICH SPLICING FACTOR	135	391	-	-
	Pral2077g00110	398	SUPERFAMILY	RNA-binding domain, RBD	299	393	IPR035979	GO:0003676
	Pral2077g00110	398	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	310	386	IPR000504	GO:0003723
	Pral2077g00110	398	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	215	277	IPR000504	GO:0003723
	Pral2077g00110	398	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	312	379	IPR000504	GO:0003723
	Pral2077g00110	398	SMART	rrm1_1	311	382	IPR000504	GO:0003723
	Pral2077g00110	398	SMART	rrm1_1	214	284	IPR000504	GO:0003723
	Pral2077g00110	398	SUPERFAMILY	RNA-binding domain, RBD	187	290	IPR035979	GO:0003676
	Pral2077g00110	398	CDD	RRM2_CID8_like	306	387	IPR034825	-
	Pral2077g00110	398	MobiDBLite	consensus disorder prediction	9	31	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral2077g00110	Pral-Chr2077	537054	541751	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral2077g00110	215	374	Eukaryotic Initiation Factors Gene Family	AT1G34140	25.610	1.06e-10	61.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral2077g00110	-		-	pcin:129303146	639.032