Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2077g00108 ATGTCGCGGCAAAGCAAAAATAAAACGGCTAGTCCAAACAATGCCAAACAAGTTGGCGACACAACCTATACCAAGATATTCGTTGGCGGACTGGCCTGGGAGACCAAAAGAGACAGTCTGAGACACTATTTTGAGCAGTTTGGAGAGATCTTGGAGGCTGTTGTTATAAACGACAGAAACAGTGGGAGATCAAAAGGCTATGGCTTTGTGACATTCAGGGACTCAGATTCTGCAGTAAGAGCCTGTCAGAATCCCTACCCTATGATTGATGGGAGGAGAGCTAATTGTAATCTTGCGGCTCTTGGTGCACAAAGATTCAATCCACATGCAACAGGAAAGGGGCAATTTATTACAACTTCTTGGCCCGTGGTTCCGGTTCCGGTTCAAGGAATCTCCTCTTGTTACAATCAACACATACCCCAGTATGCTTTTACTTATCCACCAGTCAAGTATCCTGGACATCCGCCCACAGAACAAATTTACGCAATGAACTATTATAATGTCTATGGAGGACAGCAAATTCCCATTCGTTGGCCTTCAGTGTATTACCATCCGTTTGATGGGGTTGGACAGTTGGTTGCACCAGCATATTTGAAAAAGGCACAATACCCTGACCCTTCATCTCGGGAATTGTTCAGACTCGTCGGCTTATCACAACCTATGTCAGCTTCGCCTCCAATACCCACCACAGGGGGTGCTGCTCCTGCAGCAGGAGTGGTCGGAACTTCCTCTGAGCAGAAATCTTGA 747 0.4645 MSRQSKNKTASPNNAKQVGDTTYTKIFVGGLAWETKRDSLRHYFEQFGEILEAVVINDRNSGRSKGYGFVTFRDSDSAVRACQNPYPMIDGRRANCNLAALGAQRFNPHATGKGQFITTSWPVVPVPVQGISSCYNQHIPQYAFTYPPVKYPGHPPTEQIYAMNYYNVYGGQQIPIRWPSVYYHPFDGVGQLVAPAYLKKAQYPDPSSRELFRLVGLSQPMSASPPIPTTGGAAPAAGVVGTSSEQKS 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2077g00108 248 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Pral2077g00108 248 SUPERFAMILY RNA-binding domain, RBD 15 100 IPR035979 GO:0003676
Pral2077g00108 248 Gene3D - 1 115 IPR012677 -
Pral2077g00108 248 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
Pral2077g00108 248 CDD RRM_RBM24_RBM38_like 24 99 - -
Pral2077g00108 248 PANTHER BOULE-RELATED 8 218 - -
Pral2077g00108 248 SMART rrm1_1 25 97 IPR000504 GO:0003723
Pral2077g00108 248 MobiDBLite consensus disorder prediction 223 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2077g00108 Pral-Chr2077 533208 535176 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2077g00108 20 100 C2H2 Transcription Factor Family AT2G19380 40.741 1.26e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2077g00108 - - pcin:129294759 337.421