Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2077g00107 ATGTCGCGGCAAAGCAAAAATAAAACGGCTAGTCCAAACAATGCCAAACAAGTTGGCGACACAACCTATACCAAGATATTCGTTGGCGGACTGGCCTGGGAGACCAAAAGAGACAGTCTGAGACACTATTTTGAGCAGTTTGGAGAGATCTTGGAGGCTGTTGTTATAAACGACAGAAACAGTGGGAGATCAAAAGGCTATGGCTTTGTGACATTCAGGGACTCAGATTCTGCAGTAAGAGCCTGTCAGAATCCCTACCCTATGATTGATGGGAGGAGAGCTAATTGTAATCTTGCGGCTCTTGGTGCACAAAGATTCAATCCACATGCAACAGGAAAGGGGCAATTTATTACAACTTCTTGGCCCGTGGTTCCGGTTCCGGTTCAAGGAATCTCCTCTTGTTACAATCAACACATACCCCAGTATGCTTTTACTTATCCACCAGTCAAGTATCCTGGACATCCGCCCACAGAACAAATTTACGCAATGAACTATTATAATGTCTATGGAGGACAGCAAATTCCCATTCGTTGGCCTTCAGTGTATTACCATCCGTTTGATGGGGTTGGACAGTTGGTTGCACCAGCATATTTGAAAAAGGCACAATACCCTGACCCTTCATCTCGGGAATTGTTCAGACTCGTCGGCTTATCACAACCTATGTCAGCTTCGCCTCCAATACCCACCACAGGAACAGGGGGTGCTGCTCCTGCAGCAGGAGTGGTCGGAACTTCCTCTGAGCAGAAATCTTGA 753 0.4648 MSRQSKNKTASPNNAKQVGDTTYTKIFVGGLAWETKRDSLRHYFEQFGEILEAVVINDRNSGRSKGYGFVTFRDSDSAVRACQNPYPMIDGRRANCNLAALGAQRFNPHATGKGQFITTSWPVVPVPVQGISSCYNQHIPQYAFTYPPVKYPGHPPTEQIYAMNYYNVYGGQQIPIRWPSVYYHPFDGVGQLVAPAYLKKAQYPDPSSRELFRLVGLSQPMSASPPIPTTGTGGAAPAAGVVGTSSEQKS 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2077g00107 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Pral2077g00107 250 PANTHER BOULE-RELATED 8 236 - -
Pral2077g00107 250 SUPERFAMILY RNA-binding domain, RBD 15 100 IPR035979 GO:0003676
Pral2077g00107 250 Gene3D - 1 115 IPR012677 -
Pral2077g00107 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
Pral2077g00107 250 CDD RRM_RBM24_RBM38_like 24 99 - -
Pral2077g00107 250 SMART rrm1_1 25 97 IPR000504 GO:0003723
Pral2077g00107 250 MobiDBLite consensus disorder prediction 222 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2077g00107 Pral-Chr2077 533208 535176 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2077g00107 20 100 C2H2 Transcription Factor Family AT2G19380 40.741 1.29e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2077g00107 - - pcin:129294759 337.421