Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2077g00095 ATGATGAAGAAGGGTGGTGAGTATATTCAAGCATCAAGGGAACACGATATTGGAAGCTTCACCGGCTCAAAGGCACCTGAGAATCCGAAAAAGAAAAGCAACATAGAAAACAAGAGAAGGTTTAGTGATGAACAAATTCGATCACTTGAATGCATATTTGAATCAGAGTCAAAGCTTGAGCCAAGAAAGAAGATGCAACTAGCAAGAGATCTTGGTTTGCAGCCGCGCCAAGTTGCGATATGGTTCCAAAATAGAAGAGCCAGATGGAAATCAAAACGGATGGAACAAGAGTATAGAAAACTCAGAGATGAGTATGACAATTTAGCATCTCTGTTTGAGTCGATAAAGAAAGAGAGGGAATCCTTGCAAGCTGAGGTACAAAAGCTAAGAGATTTGGTGGAGACGTGTGATGATGGTAGTAAAAGGGAAAACACGGCCGGGATGGAAAATAGCACAGAGGATGGTGCTTCAGGCAGCGAACAAAACAACTGGATCTCTGAAGCAAAACCAAATTTCTCAAATGAAGGTTCAGAGAATGCCAAGAATGATGACAAAAGAGAATTGGGATCGATTGAAAAATGGCATAGTGTTGATCCGAGTGGTCTCTTAGACCAATCTTGCAGCAGTTCGCAGTGGTTAGATTTCTGGAATTGA 654 0.4159 MMKKGGEYIQASREHDIGSFTGSKAPENPKKKSNIENKRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRMEQEYRKLRDEYDNLASLFESIKKERESLQAEVQKLRDLVETCDDGSKRENTAGMENSTEDGASGSEQNNWISEAKPNFSNEGSENAKNDDKRELGSIEKWHSVDPSGLLDQSCSSSQWLDFWN 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2077g00095 217 MobiDBLite consensus disorder prediction 134 217 - -
Pral2077g00095 217 ProSiteProfiles 'Homeobox' domain profile. 32 92 IPR001356 GO:0003677
Pral2077g00095 217 MobiDBLite consensus disorder prediction 134 148 - -
Pral2077g00095 217 FunFam Homeobox-leucine zipper protein ATHB-7 19 92 - -
Pral2077g00095 217 SUPERFAMILY Homeodomain-like 23 92 IPR009057 -
Pral2077g00095 217 MobiDBLite consensus disorder prediction 149 177 - -
Pral2077g00095 217 SMART HOX_1 35 96 IPR001356 GO:0003677
Pral2077g00095 217 Gene3D - 20 98 - -
Pral2077g00095 217 MobiDBLite consensus disorder prediction 1 39 - -
Pral2077g00095 217 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 29 177 IPR045224 GO:0003700
Pral2077g00095 217 CDD homeodomain 38 93 IPR001356 GO:0003677
Pral2077g00095 217 MobiDBLite consensus disorder prediction 201 217 - -
Pral2077g00095 217 Pfam Homeobox associated leucine zipper 92 133 IPR003106 GO:0006355|GO:0043565
Pral2077g00095 217 Coils Coil 84 132 - -
Pral2077g00095 217 MobiDBLite consensus disorder prediction 178 193 - -
Pral2077g00095 217 Pfam Homeodomain 38 90 IPR001356 GO:0003677
Pral2077g00095 217 ProSitePatterns 'Homeobox' domain signature. 67 90 IPR017970 GO:0000981|GO:0006355
Pral2077g00095 217 PRINTS Lambda-repressor HTH signature 63 72 IPR000047 GO:0003677
Pral2077g00095 217 PRINTS Lambda-repressor HTH signature 72 88 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2077g00095 Pral-Chr2077 472067 473382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2077g00095 2 125 Homeobox Transcription Factor Family AT2G46680 61.290 1.11e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral2077g00095 Homeodomain 2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2077g00095 K09338 - gmx:100499926 285.034