Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2077g00042 ATGATTTTGATTACTGGGTATTTCATATATCCATCACTTGTGGGAGGTTTCGGCGACTGGATGGACTTGGATAACATTGAGTGTGTGTCATCCTCGGATGGTATTGACGAGGACGAGATCCACCATCACGGTATACATCCTCACTCCCATCATCACTCTGAGTTTTCATCCTCAAAGCCTCGCAATGGCGCCATCAGTATGGGCCCCACGGCCATTGCTCCGGCAACCAGCGTCCACGAGTTGCTGGAATGCCCTGTCTGTACCAATTCTATGTACCCACCAATTCATCAGTGTCACAATGGGCACACCCTATGTTCAACATGTAAGACAAGGGTGCACAACCGATGTCCCACATGCAGACAAGAGCTTGGGGATATTAGATGTTTGGCTCTGGAGAAGGTAGCTGAATCACTTGAGTTACCATGTAAATACTATTCTCTTGGGTGTCCAGAAATCTTTCCATACTACAGCAAGCTCAAGCATGAGACACAGTGCAATTTTAGACCATACAATTGTCCTTATGCTGGATCAGAGTGTTCAGTTGTTGGGGACATCCCTTTCCTCGTTGCCCATCTGAGGGACGATCATAAGGTGGACATGCACACGGGATGTACATTCAACCATCGTTATGTGAAGTCAAATCCCCGTGAAGTAGAGAATGCAACTTGGATGCTCACTGTGTTTCATTGTTTCGGGCAATACTTCTGCCTTCATTTTGAAGCTTTCCAGCTTGGGATGGCCCCTGTTTACATGGCATTCCTTCGTTTCATGGGAGACGAGAATGAGGCTCGAAACTATAGCTATAGCCTAGAAGTTGGGGCAAATGGCAGGAAGCTGATTTGGGAGGGTACTCCAAGAAGTGTCCGGGATAGCCATCGCAAAGTCAGGGATAGCCATGATGGTCTTATCATCCAACGAAATATGGCCCTTTTTTTCTCTGGTGGGGATAGGAAGGAGCTTAAGCTCAGAGTTACTGGAAGAATATGGAAAGAGCAACAGAATCCAGATGCTGGGGTGTGCATACCAAATCTTTGTAGTTGA 1041 0.4678 MILITGYFIYPSLVGGFGDWMDLDNIECVSSSDGIDEDEIHHHGIHPHSHHHSEFSSSKPRNGAISMGPTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETQCNFRPYNCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDAGVCIPNLCS 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2077g00042 346 SUPERFAMILY TRAF domain-like 137 329 - -
Pral2077g00042 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 190 IPR013083 -
Pral2077g00042 346 FunFam E3 ubiquitin-protein ligase SINAT5-like 193 325 - -
Pral2077g00042 346 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 63 331 - -
Pral2077g00042 346 MobiDBLite consensus disorder prediction 39 61 - -
Pral2077g00042 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 136 IPR013083 -
Pral2077g00042 346 SUPERFAMILY RING/U-box 73 126 - -
Pral2077g00042 346 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 191 325 IPR008974 GO:0005515
Pral2077g00042 346 FunFam E3 ubiquitin-protein ligase SINAT3 136 192 - -
Pral2077g00042 346 FunFam E3 ubiquitin-protein ligase SINAT3 31 135 - -
Pral2077g00042 346 CDD RING-HC_SIAHs 82 120 - -
Pral2077g00042 346 MobiDBLite consensus disorder prediction 39 57 - -
Pral2077g00042 346 CDD Sina 198 326 - -
Pral2077g00042 346 ProSiteProfiles Zinc finger SIAH-type profile. 137 197 IPR013010 GO:0008270
Pral2077g00042 346 ProSiteProfiles Zinc finger RING-type profile. 84 120 IPR001841 -
Pral2077g00042 346 Pfam Seven in absentia protein family 126 325 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2077g00042 Pral-Chr2077 280906 285027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2077g00042 56 332 C3H Transcription Factor Family AT2G41980 77.338 1.70e-163 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2077g00042 K04506 - cave:132180687 628.246