Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2077g00009 ATGGATGACAGCTTTTCCGATATCCTTGAAGATAAGGAATTTGGTGGGGACGAACTCTTTGCCATTTTGGAGAGCCTTGAGGACTTCTCCGACTTTCCTCCCGTTGATGAAGTTGTTATCAGCACTAAGGAGAACGAGGAAACTTCAAGGTTCGCGTCACAAAAATCAAGTTCTTCAAGTGCTCTACGAGAGTCTGAAGAGACTGAGCTTGAAGCTTCACCTAAGAGCAAGAGACAGAAGCTCGCACCCAACACTTCGTCAGAGGATCCAAACCCAGATGGCCAACAAAGGACATCTCACATCACTGTTGAGCGCAACCGAAGAAAGCAAATGAACGAGCACTTGTCCGTCTTAAGGTCACTTATGCCAAACTTTTATGTCAAACGTGGAGACCAAGCATCGATAATTGGAGGAGTGGTTGATTACATAAACGAGTTGCAGCAGGTTCTACAGTCCCTGGAGGCCAAGAAGCAAAGAAAAGTATACAGTGATGTACTAAGCCCAAGGCTAGTCTCAAGTCCAAGGCCTTTAGCTCTTAGTCCTAGAAAACCCCCTATGAGCCCTAGGCTCAGCTTGCCAATTAGTCCCAGAACTCCACAGCCAGGTAGTCCTTACAAGCCCAGGTTGCAGCAAGGTTACCTTTCTCCAACCATCTCCAACTCTCTCGAGCCATCTCCTACCTCTTCTGCTGCTTCGTCCTCCATTAATGATAACATCAATGAGCTAGTGGCCAATTCCAAGTCTGCTATGGCCGATGTGGAGGTCAAGTTTTCTGGGCCACACGTTCTTTTGAAAACAGTGTCTCCGCGTATTCCAGGGCAAGCTTTGAAGATAATATCAGCACTTGAAGACTTATCTCTTGAAATCCTCCATGTCAGCATCAGCACCGCTGATGAAACCATGCTAAACTCATTCACTATTAAGATTGGAATCGAATGCCAACTCAGCGCCGAAGAACTGGCTCTACAAATCCAGCAAACATTCTGCTGA 990 0.4646 MDDSFSDILEDKEFGGDELFAILESLEDFSDFPPVDEVVISTKENEETSRFASQKSSSSSALRESEETELEASPKSKRQKLAPNTSSEDPNPDGQQRTSHITVERNRRKQMNEHLSVLRSLMPNFYVKRGDQASIIGGVVDYINELQQVLQSLEAKKQRKVYSDVLSPRLVSSPRPLALSPRKPPMSPRLSLPISPRTPQPGSPYKPRLQQGYLSPTISNSLEPSPTSSAASSSINDNINELVANSKSAMADVEVKFSGPHVLLKTVSPRIPGQALKIISALEDLSLEILHVSISTADETMLNSFTIKIGIECQLSAEELALQIQQTFC 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2077g00009 329 FunFam Transcription factor SPEECHLESS 87 161 - -
Pral2077g00009 329 MobiDBLite consensus disorder prediction 78 99 - -
Pral2077g00009 329 Pfam Helix-loop-helix DNA-binding domain 96 147 IPR011598 GO:0046983
Pral2077g00009 329 MobiDBLite consensus disorder prediction 43 109 - -
Pral2077g00009 329 MobiDBLite consensus disorder prediction 172 210 - -
Pral2077g00009 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 95 146 IPR011598 GO:0046983
Pral2077g00009 329 MobiDBLite consensus disorder prediction 62 76 - -
Pral2077g00009 329 MobiDBLite consensus disorder prediction 178 203 - -
Pral2077g00009 329 Gene3D - 87 160 IPR036638 GO:0046983
Pral2077g00009 329 Coils Coil 139 159 - -
Pral2077g00009 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 94 164 IPR036638 GO:0046983
Pral2077g00009 329 CDD bHLH_AtFAMA_like 99 169 - -
Pral2077g00009 329 SMART finulus 101 152 IPR011598 GO:0046983
Pral2077g00009 329 PANTHER TRANSCRIPTION FACTOR FAMA 15 328 IPR044283 GO:0003700|GO:0010052
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2077g00009 Pral-Chr2077 68210 70361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2077g00009 1 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 51.261 1.05e-90 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral2077g00009 HLH 2.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2077g00009 K20558 - pop:7489812 457.218