Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2075g00005 ATGAGCTTCTTGCAGGGGATTATGGACTCGCTCAGCTCAATCTTGTCTTCCCCCAATTCTTCTAATGATGATTCTCCTTCGAATCCCAACCTTCCCAGCTCTTCGAATATGGAAGGCGGGCCTACCCCCTCAATTTCTAATGAACGAGTCGCTTACAAGCTCAAAGGGTATTTCGATTTGGCCAAGGAAGAGATTGCCAAGGCTGTTAGGGCCGAAGAGTGGGGCTTGATCGATGATGCTATTCTTCATTATAACAGCGCTCAGCGGATTTTGATCGAAGCCAGTTCAACTGCTGTGCCTTCCTATATTACTTCCAGTGAACAACAGAAGGTCAAATCTTATCGTGAAAAAATATCGAAATGGCAGGGTCAAGTTTCTGAAAGGTTACAGATTCTAAGCAGACAAGCAGGTTTATATGTCATAAACTCAAGCCTTAGAACTGCAACTGAGGGACAAGCTGCTGCAGTTTCATTTAAGCCATCAAATGCTAGAAAAGGTGTGCAGCAAAAGAATCATCAAAGAACGAACCATATGGATAAAGATGTAAGCCCAAAATCTAGTCAGACATCTGGCGGAAATTATGATGCAAAATTAGTTGAAACAATTAACACTGCCATAGTAGACAGAAGTCCTTCTGTTAGATGGGAAGATATTGCGGGTCTTGAGAAGGCGAAGCAAGCACTAATGGAAATGGTTATTTTGCCGACTAAGAGAAGAGATCTATTCACTGGTCTTCGAAGGCCAGCTAGAGGTTTGCTTCTCTTTGGTCCCCCAGGTAATGGCAAAACCATGCTTGCCAAAGCAGTAGCTTCAGAATCAGCAGGAACATTTTTTAACGTATCTGCAGCTTCCTTGACGTCAAAATTTGTTGGTGAAGGTGAAAAGCTTGTCCGGACTCTTTTCATGGTAGCTATATCCAGGCAACCATCAGTGATTTTCATTGATGAGATTGACAGTATTATGTCAACAAGGTTGGCTAATGAGAATGATGCAAGCAGACGATTAAAATCTGAATTTCTTATCCAGTTTGATGGGGTAACCTCCAATCCTGATGACATTGTAATTGTTATTGGAGCTACCAATAAGCCACAAGAACTGGATGATGCAGTTCTTCGGAGACTGGTGAAGAGAATTTACGTACCTTTGCCAGATGCAAATGTTCGGAGACTTCTACTAAAGCACAAACTCAAGGGTCAAGCGTTCTCATTGCCTAGTGGAGATCTGGAAAGGCTTGTAAAAGATACAGAAGGATATTCCGGAAGTGATCTACAAGCCTTGTGTGAAGAAGCGGCAATGATGCCAATAAGAGAGCTGGGTTCTGACATCCTAACTGTTAAGTCAAATCAGGTAAGAGGACTGAGATATGAGGATTTTAAGAAGGCAATGAAAGTAATTAGACCCAGTTTAAACAAAAGCAAGTGGGAAGAGCTTGAGCGGTGGAATGAAGAGTTTGGCTCTAACTGA 1464 0.4235 MSFLQGIMDSLSSILSSPNSSNDDSPSNPNLPSSSNMEGGPTPSISNERVAYKLKGYFDLAKEEIAKAVRAEEWGLIDDAILHYNSAQRILIEASSTAVPSYITSSEQQKVKSYREKISKWQGQVSERLQILSRQAGLYVINSSLRTATEGQAAAVSFKPSNARKGVQQKNHQRTNHMDKDVSPKSSQTSGGNYDAKLVETINTAIVDRSPSVRWEDIAGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESAGTFFNVSAASLTSKFVGEGEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRLANENDASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPDANVRRLLLKHKLKGQAFSLPSGDLERLVKDTEGYSGSDLQALCEEAAMMPIRELGSDILTVKSNQVRGLRYEDFKKAMKVIRPSLNKSKWEELERWNEEFGSN 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2075g00005 487 CDD RecA-like_spastin 217 380 - -
Pral2075g00005 487 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 484 IPR027417 -
Pral2075g00005 487 FunFam Spastin, putative 211 395 - -
Pral2075g00005 487 Pfam AAA+ lid domain 407 439 IPR041569 -
Pral2075g00005 487 CDD MIT_spastin 54 132 - -
Pral2075g00005 487 FunFam AAA-type ATPase family protein 47 136 - -
Pral2075g00005 487 MobiDBLite consensus disorder prediction 15 44 - -
Pral2075g00005 487 FunFam AAA-type ATPase family protein 383 465 - -
Pral2075g00005 487 Pfam Vps4 C terminal oligomerisation domain 453 485 IPR015415 -
Pral2075g00005 487 SMART AAA_5 248 384 IPR003593 GO:0016887
Pral2075g00005 487 Gene3D - 383 465 - -
Pral2075g00005 487 Pfam ATPase family associated with various cellular activities (AAA) 252 382 IPR003959 GO:0005524|GO:0016887
Pral2075g00005 487 PANTHER AAA DOMAIN-CONTAINING 108 486 - -
Pral2075g00005 487 SMART smart 54 131 IPR007330 -
Pral2075g00005 487 MobiDBLite consensus disorder prediction 15 43 - -
Pral2075g00005 487 Gene3D - 211 481 IPR027417 -
Pral2075g00005 487 Gene3D - 47 136 - -
Pral2075g00005 487 ProSitePatterns AAA-protein family signature. 354 373 IPR003960 GO:0005524|GO:0016887
Pral2075g00005 487 MobiDBLite consensus disorder prediction 161 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2075g00005 Pral-Chr2075 38180 44922 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2075g00005 211 437 Calmodulin-binding Proteins AT3G56690 41.949 7.73e-45 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2075g00005 K13254 - gmx:100786789 745.347