Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2074g00016 ATGCCGGAGGTGGCCCTCAATGCTGCTGCTAATTCCAACTCCAACGCCGGCGTTATTGGTCAGTTCGGTGATACCACCCTCACCAAAGTGTTTGTTGGAGGATTGGCTTGGGAGACTCCCAAGGACGCTATGAGAGAGCATTTCCAGAAGTACGGCGAGATCCTCGAGGCTGTCATTATCTCTGATAAGGCTACCGGCAGATCCAAGGGCTATGGCTTCGTGACCTTTAAGGAAGCTGAAGCTGCGAAGAAGGCTTGTGAGGATCCTACGCCGGTCATCAATGGCCGCCGAGCCAACTGCAATCTGGCTTCGCTCGGCGCGCGACGCCCTAGGTCCACCAACACTTCACCGCCTCGTCAACAAGCATCGAATGGCGGAGGACCAGGGGCCTCCCAAAATGCACCACCCCCGCCAGCCAATCACGGCCCGTGGTATTATCCGGTGGGGACACCTGCTTCACATTTCCATCATCACCACCATCAACCTGTTCCTCTATATGGGTACACCCCAACGTACATTCCAACTGACATAAATTACAATCAGAAGCTAGGCTACACTGGCGGTGGGCCCTACATGAATGGTTACTACTCCCCACTGTACCCCAGCCAGGCTATGGTGGGTGGGAACACATTGATGCCGATGTACCCTCTTTATCAGTACCATCAAACGCACACGATGGGCCTGCCTGCTCACATATTCCAGCCACCCACAGCGGGGCACGTGGCCATCATGTCAAAGCCCGCGTCCATCACTCCTAACACAGGTGAAAGCTTGAAAAAGGTTGGCTGA 789 0.5488 MPEVALNAAANSNSNAGVIGQFGDTTLTKVFVGGLAWETPKDAMREHFQKYGEILEAVIISDKATGRSKGYGFVTFKEAEAAKKACEDPTPVINGRRANCNLASLGARRPRSTNTSPPRQQASNGGGPGASQNAPPPPANHGPWYYPVGTPASHFHHHHHQPVPLYGYTPTYIPTDINYNQKLGYTGGGPYMNGYYSPLYPSQAMVGGNTLMPMYPLYQYHQTHTMGLPAHIFQPPTAGHVAIMSKPASITPNTGESLKKVG 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2074g00016 262 MobiDBLite consensus disorder prediction 106 130 - -
Pral2074g00016 262 FunFam Putative RNA-binding protein ARP1 22 111 - -
Pral2074g00016 262 SUPERFAMILY RNA-binding domain, RBD 25 130 IPR035979 GO:0003676
Pral2074g00016 262 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 105 IPR000504 GO:0003723
Pral2074g00016 262 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 87 IPR000504 GO:0003723
Pral2074g00016 262 Gene3D - 22 109 IPR012677 -
Pral2074g00016 262 PANTHER BOULE-RELATED 8 234 - -
Pral2074g00016 262 CDD RRM_RBM24_RBM38_like 28 103 - -
Pral2074g00016 262 MobiDBLite consensus disorder prediction 104 145 - -
Pral2074g00016 262 SMART rrm1_1 29 101 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2074g00016 Pral-Chr2074 176500 179680 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2074g00016 24 218 C2H2 Transcription Factor Family AT2G19380 27.885 2.28e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2074g00016 - - pper:18785076 358.992