Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2072g00022 ATGTTGCAGACTTATGATCGGCCATTTATCCAAAGATGGTTAAATGAAGGCCACAGGACATGCCCTCAAACCCAGCAAGTCCTTTCTCACTCTATCCTTACTCCAAATCATCTGGTCCGTGACATGATTTCACATTGGTGCAGAGAGAATGGAGTTGAGTCGCCTAAGCTTGTTCGGGATACTGATGAAGAAGTAATAACTGGTGCAGACAGAAGCCATTTAAATTCATTGCTCAAGAAGTTGTCAATGTCTATTTCTGATCAGAAAGCAGCTGCAAAAGAGCTCCGGCTATTAACAAAGCGAATGCCCTCATTTCGAATCCTTTTTAATGAGTCCAGTGATGTGATGTTGCAGTTGCTCAGTCCATTGTCACCTGGTACGGCTTGTGTCCCTCCTGACCTTCACGAGGACTTGATCACTACTGTTCTAAATCTCTCAATTCATGATGATAATAAGAAAATGTTTGCTGAGAGTCCTACGGTCATCCCTCTGCTGATTGAGTCCTTGAAATTTGGAACCATCCAAGCAAGAAGTAATGCTGCGGCAGCTATTTTCACATTATCAGCACTTGATTCCAACAAGGGCATCATTGGAAATTCTGGGGCCATCAAACATTTAATTGAGCTTTTGGAGGAGGGACATCCACTGGCCATGAAAGATGCTGCTTCTGCTATTTTCAACCTATGTTTGGTTCATGAAAATAAAGGAAGAACTGTTGGAGAAAGAGCTGTTCCGGTTATCCTTGACAAGATCATGGACCGTGTTCTAGTTGATGAGTTGTTGGCTATTCTGGCACTCCTGTCTAGCCATCCAAAGGCTGCTGAAGAAATGAGCGATCTTGGTGCTGTCCCCTTGTTGCTCAGTATTATGCGGGAGAGCACATCCGAAAGCTGCAAGGAAAATTGTGTTGCAATCCTATACACAATCTGTCTTACTGATAGAACAAAATGGAAGGAAATTAGAGAAGAAGAAAAAGCCAGGGGCACGCTTTCCGAGCTCGCACAATGTGGGACTTCAAGGGCCAAAAGGAAGGCTAGTGGGATTCTTCAGAGGCTCCATAGATCTCCCACGTTAACACACACGGCTTAG 1089 0.4417 MLQTYDRPFIQRWLNEGHRTCPQTQQVLSHSILTPNHLVRDMISHWCRENGVESPKLVRDTDEEVITGADRSHLNSLLKKLSMSISDQKAAAKELRLLTKRMPSFRILFNESSDVMLQLLSPLSPGTACVPPDLHEDLITTVLNLSIHDDNKKMFAESPTVIPLLIESLKFGTIQARSNAAAAIFTLSALDSNKGIIGNSGAIKHLIELLEEGHPLAMKDAASAIFNLCLVHENKGRTVGERAVPVILDKIMDRVLVDELLAILALLSSHPKAAEEMSDLGAVPLLLSIMRESTSESCKENCVAILYTICLTDRTKWKEIREEEKARGTLSELAQCGTSRAKRKASGILQRLHRSPTLTHTA 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2072g00022 362 PANTHER U BOX DOMAIN-CONTAINING 3 352 - -
Pral2072g00022 362 ProSiteProfiles U-box domain profile. 1 53 IPR003613 GO:0004842|GO:0016567
Pral2072g00022 362 Gene3D - 72 360 IPR011989 -
Pral2072g00022 362 SUPERFAMILY RING/U-box 3 56 - -
Pral2072g00022 362 Pfam U-box domain 3 50 IPR003613 GO:0004842|GO:0016567
Pral2072g00022 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 53 IPR013083 -
Pral2072g00022 362 FunFam RING-type E3 ubiquitin transferase 257 358 - -
Pral2072g00022 362 SMART Ubox_2 3 46 IPR003613 GO:0004842|GO:0016567
Pral2072g00022 362 SMART arm_5 270 311 IPR000225 GO:0005515
Pral2072g00022 362 SMART arm_5 148 189 IPR000225 GO:0005515
Pral2072g00022 362 SMART arm_5 190 230 IPR000225 GO:0005515
Pral2072g00022 362 SUPERFAMILY ARM repeat 75 355 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2072g00022 Pral-Chr2072 70318 72486 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2072g00022 42 362 U-box Gene Family AT3G07360 57.273 2.59e-121 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2072g00022 - - gmx:100806619 537.724